View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14791_low_7 (Length: 376)
Name: NF14791_low_7
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14791_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 3001571 - 3001228
Alignment:
| Q |
18 |
atcttagcgcttcttcaaatttcccgctttggtaataacaagaaatcactgtattccagcatgccacatccttatcaggcatttcatcaaacaactttac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3001571 |
atcttagcgcttcttcaaatttcccgctttggtaataacaagaaatcactgtattccagcatgccacatccttatcaggcatttcatcaaacaactttac |
3001472 |
T |
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| Q |
118 |
agcacactcaaactcattacatttcgcatacatacctacaagagagcttccaactacaatatccaccattaaaccctcttttaccaaacacgtatgaatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3001471 |
agcacactcaaactcattacatttcgcatacatacctacaagagagcttccaactacaatatccaccattaaaccctcttttaccaaacacgtatgaatc |
3001372 |
T |
|
| Q |
218 |
atttgtcccaacacaactctacgaagcccgccacaggctttaagaacactagggtaagtataactatcaggtttcaaacaaggataacacatcaacttat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3001371 |
atttgtcccaacacaactctacgaagcccgccacaggctttaagaacactagggtaagtataactatcaggtttcaaacaaggataacacatcaacttat |
3001272 |
T |
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| Q |
318 |
caaaaagccctagagcttcatcatacatacaattcctagtataa |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3001271 |
caaaaagccctagagcttcatcatacatacaattcctagtataa |
3001228 |
T |
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