View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14791_low_9 (Length: 358)
Name: NF14791_low_9
Description: NF14791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14791_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 22751234 - 22751568
Alignment:
| Q |
18 |
aaaggaacatttgccaacattacaatgatagttgcaacaagaccggaaattgaagcgatgccaagatttttatacaaaacaaacatagcaactaaaacct |
117 |
Q |
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| T |
22751234 |
aaaggaacatttgccaacattacaatgatagttgcaacaagaccggaaattgaagcgatgccaagatttttatacaaaacaaacatagcaactaaaacct |
22751333 |
T |
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| Q |
118 |
gaaaaactaccaaccaaagatcatgcaagtgataactgaaatcgccaactctttcagcatcaacagtcatgaaattgattatctcgccgctagtgtggcc |
217 |
Q |
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| T |
22751334 |
gaaaaactaccaaccaaagatcatgcaagtgataactgaaatcgccaactctttcagcatcaacagtcatgaaattgattatctcgccgctagtgtggcc |
22751433 |
T |
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| Q |
218 |
ttgcttggattgacaagaaagtgtcaaagttttatcatagataattgttaccagaagtgcttggattcttattccaattttctgtaacctgaaaacccat |
317 |
Q |
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| T |
22751434 |
ttgtttggattgacaagaaagtgtcaaagttttatcatagataattgttaccagaagtgcttggattcttattccaattgtctgtaacctgaaaacccat |
22751533 |
T |
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| Q |
318 |
tgcctctttgttagacactccacaacctttgctac |
352 |
Q |
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| T |
22751534 |
tgcctctttgttagacactccacaacctttgctac |
22751568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 41439360 - 41439538
Alignment:
| Q |
21 |
ggaacatttgccaacattacaatgatagttgcaacaagaccggaaattgaagcgatgccaagatttttatacaaaacaaacatagcaactaaaacctgaa |
120 |
Q |
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| T |
41439360 |
ggaacatttgctaacataacaatgatagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgccagtgtaacttgca |
41439459 |
T |
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| Q |
121 |
aaactaccaaccaaagatcatgcaagtgataactgaaatcgccaactctttcagcatcaacagtcatgaaattgattat |
199 |
Q |
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| T |
41439460 |
aagctactaaccacaaatcatgcatgtaccaactgaatttatcaactctttcggcatcaacagtcatgaaattgattat |
41439538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 41452529 - 41452707
Alignment:
| Q |
21 |
ggaacatttgccaacattacaatgatagttgcaacaagaccggaaattgaagcgatgccaagatttttatacaaaacaaacatagcaactaaaacctgaa |
120 |
Q |
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| T |
41452529 |
ggaacatttgctaacataacaataatagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgccagtgtaacttgca |
41452628 |
T |
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| Q |
121 |
aaactaccaaccaaagatcatgcaagtgataactgaaatcgccaactctttcagcatcaacagtcatgaaattgattat |
199 |
Q |
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| T |
41452629 |
aagctactaaccacaaatcatgcatgtaccaactgaaactaccaactctttcggcatcaacagtcatgaaattgattat |
41452707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 14371666 - 14371629
Alignment:
| Q |
162 |
ccaactctttcagcatcaacagtcatgaaattgattat |
199 |
Q |
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| T |
14371666 |
ccaactgtttcagcatcaacggtcatgaaattgattat |
14371629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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