View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14792_high_3 (Length: 353)
Name: NF14792_high_3
Description: NF14792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14792_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 11592402 - 11592730
Alignment:
| Q |
8 |
atgtccaagaatatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgt |
107 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592402 |
atgtccaaaaacatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgt |
11592501 |
T |
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| Q |
108 |
cttggcataaccctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11592502 |
cttggcataaccctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatca |
11592601 |
T |
|
| Q |
208 |
atgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11592602 |
atgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccat |
11592701 |
T |
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| Q |
308 |
ctctttccctttttctaatgacccttttg |
336 |
Q |
| |
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||||| |||||||||||||||||||||| |
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| T |
11592702 |
ttctttgcctttttctaatgacccttttg |
11592730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 336
Target Start/End: Complemental strand, 11645717 - 11645389
Alignment:
| Q |
8 |
atgtccaagaatatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgt |
107 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645717 |
atgtccaaaaacatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgt |
11645618 |
T |
|
| Q |
108 |
cttggcataaccctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11645617 |
cttggcataaccctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatca |
11645518 |
T |
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| Q |
208 |
atgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11645517 |
atgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccat |
11645418 |
T |
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| Q |
308 |
ctctttccctttttctaatgacccttttg |
336 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
11645417 |
ttctttgcctttttctaatgacccttttg |
11645389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 336
Target Start/End: Complemental strand, 37181056 - 37180883
Alignment:
| Q |
162 |
attccataaccacttgaaaatccc-aataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttc |
260 |
Q |
| |
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|||||||||||||||| ||||||| || ||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
37181056 |
attccataaccacttgcaaatccctaacaaattcaactctttcgtcaatgattcaactctctccatagataatgacacaaacttctttacaccgtcttat |
37180957 |
T |
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| Q |
261 |
gcttcggtcacgttgtgaacaacatgttccttaaacgtttgtccca-tctctttccctttttctaatgacccttttg |
336 |
Q |
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| ||||||||||| | ||||||||||||| || |||||||||| | | ||| |||||||| ||||||||||||| |
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| T |
37180956 |
gtctcggtcacgtt---accaacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttg |
37180883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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