View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14792_high_5 (Length: 291)
Name: NF14792_high_5
Description: NF14792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14792_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 46109235 - 46109507
Alignment:
| Q |
1 |
aagggagtattttctgtttgtgagtgtgaatttatatgtattacctcctctctggagagagaaacaattgtagcttgtaagcaagaggttgtaatttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46109235 |
aagggagtattttctgtttgtgagtgtgaaattatatgtattacctcctctctggagagagaaacaattgtagcttgtaagcaagaggttgtaatttgtt |
46109334 |
T |
|
| Q |
101 |
attaaaatactatgataaaatccttttcactgttaagggaaaatgctcagcttgttccagaatttccgtctaaacttgattggcttaatacagctccgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46109335 |
attaaaatactatgataaaatccttttcactgttaagggaaaatgctcagcttgttccagaatttccgtctaaacttgattggcttaatacagctccgct |
46109434 |
T |
|
| Q |
201 |
tcagtttcgcagggtacttttattcttgcattcagttttaattttaatctgatgaaaacatctgtgctcatta |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46109435 |
tcagtttcgcagggtacttttattcttgcattcagttttaattttaatctgatgaaaacatctgtgctcatta |
46109507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University