View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14792_low_1 (Length: 692)

Name: NF14792_low_1
Description: NF14792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14792_low_1
NF14792_low_1
[»] chr4 (23 HSPs)
chr4 (49-514)||(23408356-23408821)
chr4 (236-510)||(23415712-23415986)
chr4 (237-514)||(23453376-23453653)
chr4 (237-510)||(23868733-23869006)
chr4 (237-510)||(24307224-24307497)
chr4 (237-514)||(23402071-23402348)
chr4 (237-510)||(23885828-23886101)
chr4 (237-510)||(26832736-26833009)
chr4 (237-510)||(26434025-26434298)
chr4 (237-510)||(26435805-26436078)
chr4 (237-510)||(34662045-34662318)
chr4 (548-674)||(24307060-24307186)
chr4 (554-674)||(23401911-23402031)
chr4 (545-672)||(26832574-26832701)
chr4 (554-674)||(23408861-23408981)
chr4 (545-672)||(26433863-26433990)
chr4 (545-672)||(26435643-26435770)
chr4 (545-674)||(23416018-23416147)
chr4 (545-674)||(23868569-23868698)
chr4 (545-674)||(23885664-23885793)
chr4 (289-421)||(23451788-23451920)
chr4 (557-674)||(23453696-23453813)
chr4 (551-655)||(34662359-34662463)
[»] chr1 (6 HSPs)
chr1 (260-510)||(41670401-41670651)
chr1 (240-513)||(40795767-40796040)
chr1 (248-362)||(33216594-33216708)
chr1 (260-510)||(29391467-29391717)
chr1 (237-315)||(45576399-45576477)
chr1 (382-418)||(33216558-33216594)
[»] chr7 (3 HSPs)
chr7 (239-362)||(47317431-47317554)
chr7 (260-510)||(40180297-40180547)
chr7 (382-418)||(47317395-47317431)
[»] chr2 (2 HSPs)
chr2 (606-671)||(14715355-14715420)
chr2 (275-327)||(14715433-14715485)
[»] chr8 (1 HSPs)
chr8 (385-510)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 49 - 514
Target Start/End: Original strand, 23408356 - 23408821
Alignment:
49 aaatgtattcagtctttgatacccctagatcaatcattcaaaacagagagaaacccaattctacaagcaattttcaagtcaaatatcattaactccattt 148  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
23408356 aaatgtattccgtctttgatacccctagatcaatcattcaaaacagagagaaacccaattctacaagcaattttcatgtcaaatatcattaactccattt 23408455  T
149 cttacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaaacactaagaaaccaataaacataaacgaaatgtctaagagcttg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
23408456 cttacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaaacactaagaaaccaataaacataatcgaaatgtctaagagctag 23408555  T
249 taaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgat 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||    
23408556 taaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttcccttgaagtgat 23408655  T
349 tgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgctt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||    
23408656 tgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgctt 23408755  T
449 gagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 514  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
23408756 gagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca 23408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 236 - 510
Target Start/End: Original strand, 23415712 - 23415986
Alignment:
236 gtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt 335  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23415712 gtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt 23415811  T
336 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
23415812 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc 23415911  T
436 catggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
    |||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||    
23415912 catggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23415986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 237 - 514
Target Start/End: Original strand, 23453376 - 23453653
Alignment:
237 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 336  Q
    ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
23453376 tctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttc 23453475  T
337 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
23453476 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc 23453575  T
437 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 514  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||    
23453576 atggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca 23453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 237 - 510
Target Start/End: Complemental strand, 23869006 - 23868733
Alignment:
237 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 336  Q
    ||||||| || || |||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
23869006 tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc 23868907  T
337 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
23868906 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattccc 23868807  T
437 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
    ||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||    
23868806 atggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23868733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 237 - 510
Target Start/End: Complemental strand, 24307497 - 24307224
Alignment:
237 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 336  Q
    ||||||| || || ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
24307497 tctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc 24307398  T
337 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
24307397 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattccc 24307298  T
437 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||    
24307297 atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc 24307224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 237 - 514
Target Start/End: Complemental strand, 23402348 - 23402071
Alignment:
237 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 336  Q
    ||||||| || |||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
23402348 tctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc 23402249  T
337 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
23402248 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc 23402149  T
437 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 514  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||    
23402148 atggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca 23402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 237 - 510
Target Start/End: Complemental strand, 23886101 - 23885828
Alignment:
237 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 336  Q
    ||||||| || |||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
23886101 tctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc 23886002  T
337 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
23886001 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc 23885902  T
437 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||    
23885901 atggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23885828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 237 - 510
Target Start/End: Complemental strand, 26833009 - 26832736
Alignment:
237 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 336  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||    
26833009 tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc 26832910  T
337 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||    
26832909 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgataccc 26832810  T
437 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
26832809 atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26832736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 237 - 510
Target Start/End: Complemental strand, 26434298 - 26434025
Alignment:
237 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 336  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||    
26434298 tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc 26434199  T
337 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||    
26434198 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgataccc 26434099  T
437 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||    
26434098 atggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26434025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 237 - 510
Target Start/End: Complemental strand, 26436078 - 26435805
Alignment:
237 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 336  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || |||||||| ||||| || |||||||||||    
26436078 tctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc 26435979  T
337 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||||||| || |||    
26435978 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgataccc 26435879  T
437 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
26435878 atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26435805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 237 - 510
Target Start/End: Original strand, 34662045 - 34662318
Alignment:
237 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 336  Q
    ||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||||||||    
34662045 tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttc 34662144  T
337 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 436  Q
    ||| ||||| || || ||||||||||| || |  ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||    
34662145 cctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataataccc 34662244  T
437 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| |||||    
34662245 atggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc 34662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 548 - 674
Target Start/End: Complemental strand, 24307186 - 24307060
Alignment:
548 gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt 647  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
24307186 gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt 24307087  T
648 tcttctctgctggcttcttctctccct 674  Q
    |||||||||||||||||||||||||||    
24307086 tcttctctgctggcttcttctctccct 24307060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 554 - 674
Target Start/End: Complemental strand, 23402031 - 23401911
Alignment:
554 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
23402031 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct 23401932  T
654 ctgctggcttcttctctccct 674  Q
    | |||||||||||||||||||    
23401931 ccgctggcttcttctctccct 23401911  T

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Target: chr4; HSP #14
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 545 - 672
Target Start/End: Complemental strand, 26832701 - 26832574
Alignment:
545 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 644  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
26832701 ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26832602  T
645 gtttcttctctgctggcttcttctctcc 672  Q
    ||||||||||||||||||||||||||||    
26832601 gtttcttctctgctggcttcttctctcc 26832574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 554 - 674
Target Start/End: Original strand, 23408861 - 23408981
Alignment:
554 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct 653  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
23408861 gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct 23408960  T
654 ctgctggcttcttctctccct 674  Q
    | |||||||||||||||||||    
23408961 ccgctggcttcttctctccct 23408981  T

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Target: chr4; HSP #16
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 545 - 672
Target Start/End: Complemental strand, 26433990 - 26433863
Alignment:
545 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 644  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
26433990 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26433891  T
645 gtttcttctctgctggcttcttctctcc 672  Q
    ||||||||||||||||||||||||||||    
26433890 gtttcttctctgctggcttcttctctcc 26433863  T

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Target: chr4; HSP #17
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 545 - 672
Target Start/End: Complemental strand, 26435770 - 26435643
Alignment:
545 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 644  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
26435770 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26435671  T
645 gtttcttctctgctggcttcttctctcc 672  Q
    ||||||||||||||||||||||||||||    
26435670 gtttcttctctgctggcttcttctctcc 26435643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 545 - 674
Target Start/End: Original strand, 23416018 - 23416147
Alignment:
545 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 644  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |    
23416018 ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg 23416117  T
645 gtttcttctctgctggcttcttctctccct 674  Q
    |||||||||| |||||||||||||||||||    
23416118 gtttcttctccgctggcttcttctctccct 23416147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 545 - 674
Target Start/End: Complemental strand, 23868698 - 23868569
Alignment:
545 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 644  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
23868698 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg 23868599  T
645 gtttcttctctgctggcttcttctctccct 674  Q
    |||||||||| |||||||||||||||||||    
23868598 gtttcttctccgctggcttcttctctccct 23868569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 545 - 674
Target Start/End: Complemental strand, 23885793 - 23885664
Alignment:
545 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 644  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || |    
23885793 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg 23885694  T
645 gtttcttctctgctggcttcttctctccct 674  Q
    ||||||||||||||||||||||||||||||    
23885693 gtttcttctctgctggcttcttctctccct 23885664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 289 - 421
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
289 cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct 388  Q
    ||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||    
23451788 cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct 23451887  T
389 tgagcaagcttctcgaagatatcattgatgaaa 421  Q
    ||||| |||||||| |||||||| |||||||||    
23451888 tgagcgagcttctcaaagatatcgttgatgaaa 23451920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 557 - 674
Target Start/End: Original strand, 23453696 - 23453813
Alignment:
557 ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttctctg 656  Q
    ||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||||||| |    
23453696 ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctccg 23453795  T
657 ctggcttcttctctccct 674  Q
    ||||||||||||||||||    
23453796 ctggcttcttctctccct 23453813  T

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Target: chr4; HSP #23
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 551 - 655
Target Start/End: Original strand, 34662359 - 34662463
Alignment:
551 gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct 650  Q
    |||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||    
34662359 gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct 34662458  T
651 tctct 655  Q
    |||||    
34662459 tctct 34662463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 2e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 260 - 510
Target Start/End: Complemental strand, 41670651 - 41670401
Alignment:
260 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 359  Q
    ||||||||||| || ||||| ||||||||||| || | |||||| || |||||||| |  || |||||||| || ||||  ||||||||||| |||||||    
41670651 acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct 41670552  T
360 tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat 459  Q
    ||||||| |  ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||||||||||    
41670551 tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat 41670452  T
460 gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
    ||| || ||||| || || || || ||||| |||||||||||||| |||||    
41670451 gtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc 41670401  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 240 - 513
Target Start/End: Complemental strand, 40796040 - 40795767
Alignment:
240 aagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct 339  Q
    ||||||||||||| ||||| || || ||||| || || || ||||| |||||||| | ||| || |||||||| || |  || ||||||||||| || |     
40796040 aagagcttgtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacg 40795941  T
340 tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatg 439  Q
     || ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || |||||     
40795940 agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccata 40795841  T
440 gctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctac 513  Q
    || ||||| ||||| |||||||| || ||||| || || || || ||||| |||||||||||||| ||||||||    
40795840 gccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac 40795767  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 248 - 362
Target Start/End: Complemental strand, 33216708 - 33216594
Alignment:
248 gtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtga 347  Q
    |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||    
33216708 gtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtga 33216609  T
348 ttgttggcttcttgt 362  Q
    |||||||||||||||    
33216608 ttgttggcttcttgt 33216594  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 260 - 510
Target Start/End: Complemental strand, 29391717 - 29391467
Alignment:
260 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 359  Q
    ||||||||||| ||||| ||||||||||| || ||||||||||| |||||||| |  |  || || || ||||| ||||| || || || || || ||||    
29391717 acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct 29391618  T
360 tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat 459  Q
    ||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||   || ||||| ||    
29391617 tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctat 29391518  T
460 gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
     || || ||||| ||||| || || ||||| ||||| ||||| || |||||    
29391517 atcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc 29391467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 45576477 - 45576399
Alignment:
237 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 315  Q
    ||||||||||||| || || |||||||| ||||| || ||||||||| ||||||| ||||||||| | || ||||||||    
45576477 tctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag 45576399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
382 tgattcttgagcaagcttctcgaagatatcattgatg 418  Q
    ||||||||||||||||||| |||||||||||||||||    
33216594 tgattcttgagcaagcttcacgaagatatcattgatg 33216558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 47317554 - 47317431
Alignment:
239 taagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccc 338  Q
    ||||| || |||||||| |||||||| ||||| || ||||||||| |||| |||||||||||||||||||||| |||||||||  |||| ||||||||||    
47317554 taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttccc 47317455  T
339 ttgaagtgattgttggcttcttgt 362  Q
    ||||||||||||||||||||||||    
47317454 ttgaagtgattgttggcttcttgt 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 260 - 510
Target Start/End: Original strand, 40180297 - 40180547
Alignment:
260 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 359  Q
    |||||||| || ||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || |||||||    
40180297 acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttct 40180396  T
360 tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat 459  Q
    |||| || | ||| |  |  || ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| ||    
40180397 tgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgat 40180496  T
460 gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 510  Q
     || || ||||| |||||||| || ||||| ||||| |||||||| |||||    
40180497 atcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttc 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
382 tgattcttgagcaagcttctcgaagatatcattgatg 418  Q
    ||||||||||||||||||| |||||||||||||||||    
47317431 tgattcttgagcaagcttcacgaagatatcattgatg 47317395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 606 - 671
Target Start/End: Complemental strand, 14715420 - 14715355
Alignment:
606 gagctttctcggcgacggtggacttcttctcctctgcgggtttcttctctgctggcttcttctctc 671  Q
    ||||||||||  |||| ||| | |||||||||||||||||||||||||| ||||||||||||||||    
14715420 gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctcagctggcttcttctctc 14715355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
275 tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt 327  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||    
14715485 tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt 14715433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 510
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
385 ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact 484  Q
    ||||||||| || ||||  |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || ||     
29684826 ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc 29684727  T
485 ttgaatatgtagatcttgtatgtttc 510  Q
    |||||||| || |||||||| |||||    
29684726 ttgaatatatatatcttgtaggtttc 29684701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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