View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14792_low_2 (Length: 643)
Name: NF14792_low_2
Description: NF14792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14792_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 386 - 626
Target Start/End: Original strand, 12117597 - 12117835
Alignment:
| Q |
386 |
aaatgtttggatgaacttctttaagcttgtaagaattataaaattcttttctatatttaattgaannnnnnncatattaactacatgttaatataaattg |
485 |
Q |
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| T |
12117597 |
aaatgtttggatgaacttctttaagcttgtaagaattataaaattcttttctatatttaattgaattattttcat--taactagatgtaaatataaattg |
12117694 |
T |
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| Q |
486 |
ggctaaaatctactcctatttagcccaacaatgattaaattctcttaattgaacatgatacaataattacattgctagtacatacataggaaccctgctt |
585 |
Q |
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| T |
12117695 |
ggctaaaatctactcctatttagcccaacaatgattaaattctcttaattgaacatgatacaataattacatagctagtacatacataggaaccctgctt |
12117794 |
T |
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| Q |
586 |
tgcttaattagtgtgatcacctactaataatcagtacctaa |
626 |
Q |
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| T |
12117795 |
tgcttaattagtgtgatcacctactaataatcagtacctaa |
12117835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 12117143 - 12117385
Alignment:
| Q |
7 |
aatataattcgaacattttattagtgtgttttgaattttatatgggaattaggaccttcaccaaatgcttatattaaattataagagaggaaattggcta |
106 |
Q |
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| T |
12117143 |
aatataatccgaacattttattagtgtgttttgaattttatatgggaattaggaccttcaccaaatgcttat--taaattatcagagaggaaattggcta |
12117240 |
T |
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| Q |
107 |
cttataaacttttcaggttttgagatgctt---atatcaaagaaagtagtagtagtaacttgcatggggaatactttcatctgctgcattcattcctttt |
203 |
Q |
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| T |
12117241 |
cttataaacttttcaggttttgagatgcatcatatatcaaagaaagtagtagtagtaacttgcatgggtaatactttcatctgctgcattcattcctttt |
12117340 |
T |
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| Q |
204 |
ctgcataaagttccttttaagggagtaaaaaattctcacaggctt |
248 |
Q |
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| T |
12117341 |
ctgcataaagttccttttaagggagtaaaaaattcctacaggctt |
12117385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 12117453 - 12117504
Alignment:
| Q |
241 |
acaggcttataggtgcatattaatgcaaatatctaacacgatcttcccttat |
292 |
Q |
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| T |
12117453 |
acagacttataggtgcatattaatgcaaatatctaacacgatctttccttat |
12117504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 12117451 - 12117415
Alignment:
| Q |
236 |
ttctcacaggcttataggtgcatattaatgcaaatat |
272 |
Q |
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| T |
12117451 |
ttctcgcaggcttatagatgcatattaatgcaaatat |
12117415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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