View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14792_low_6 (Length: 301)
Name: NF14792_low_6
Description: NF14792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14792_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 9909761 - 9909484
Alignment:
| Q |
16 |
aatcactcgttttaaatataattactcgttataaagagatacaaatgtataannnnnnnngtttaaagtgcttaccatagcttgattgtgttgaacggtt |
115 |
Q |
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| T |
9909761 |
aatcactcgttttaaatataattactcattataaagagatacaaatgtataattttttt-gtttaaagtgcttaccatagcttgcttgtgttgaacg-tt |
9909664 |
T |
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| Q |
116 |
gttgttaaatgaggaacttccatgctccatactgctttaggacttaaatttgactattgaataatggtggtaatttattttgagaagaatggatgtgaat |
215 |
Q |
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| T |
9909663 |
gttgttaaatgaggaacttccatgctccatactgctttaggacttaaatttgactattgaataatggtggtaatttattttgagaagaatggatgtgaat |
9909564 |
T |
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| Q |
216 |
tttagtctatactcttcttaatttatagaggaagaatgacctttcctcataaaatagaaacgtaaaattatcaccctatg |
295 |
Q |
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| T |
9909563 |
tttagtctatactcttcttaaattatagaggaaaaattacctttccccataaaatagaaacgtaaaattatcaccctatg |
9909484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 76 - 284
Target Start/End: Complemental strand, 9919964 - 9919756
Alignment:
| Q |
76 |
gtttaaagtgcttaccatagcttgattgtgttgaacggttgttgttaaatgaggaacttccatgctccatactgctttaggacttaaatttgactattga |
175 |
Q |
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| T |
9919964 |
gtttagagtgcttaccagagcttgagtgtgccgaacggttgttgttagatgaaggacttccacgttccataatgatttaggacttaaatttgattattga |
9919865 |
T |
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| Q |
176 |
ataatggtggtaatttattttgagaagaatggatgtgaattttagtctatactcttcttaatttatagaggaagaatgacctttcctcataaaatagaaa |
275 |
Q |
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| T |
9919864 |
acaatggtggtaatttattttaagaagaatagatgtgaattttagtctatactcttattaatttatagaggaagaatgacctttccccataaaatagaaa |
9919765 |
T |
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| Q |
276 |
cgtaaaatt |
284 |
Q |
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| T |
9919764 |
cgtaaaatt |
9919756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 9930140 - 9930082
Alignment:
| Q |
187 |
aatttattttgagaagaatggatgtgaattttagtctatactcttcttaatttatagag |
245 |
Q |
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| T |
9930140 |
aatttgttttgagaagaatggttgagaattttggtctgcactcttctgaatttatagag |
9930082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 9635377 - 9635413
Alignment:
| Q |
76 |
gtttaaagtgcttaccatagcttgattgtgttgaacg |
112 |
Q |
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| T |
9635377 |
gtttaaggtgcttaccagagcttgattgtgttgaacg |
9635413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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