View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14792_low_8 (Length: 281)
Name: NF14792_low_8
Description: NF14792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14792_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 49871443 - 49871180
Alignment:
| Q |
17 |
catagggaccatgttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaa |
116 |
Q |
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| T |
49871443 |
catagggaccatgttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaa |
49871344 |
T |
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| Q |
117 |
cattcagtaagttactaatgcaatgtttaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaatttgacaggtgtgaactc |
216 |
Q |
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| T |
49871343 |
cattcagtaagttactaatgcaatgattaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaa-ttgacaggtgtgaactc |
49871245 |
T |
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| Q |
217 |
tgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcag |
281 |
Q |
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| T |
49871244 |
tgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcag |
49871180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 49865511 - 49865243
Alignment:
| Q |
18 |
atagggaccatgttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaac |
117 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49865511 |
atagggaccatgttactattattggcgatggtcccacaaagaccatatttactggcagcaaaagctatgctgatggtgtgcagacttacaataccgcaac |
49865412 |
T |
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| Q |
118 |
attcagtaagttac----------taatgcaatgtttaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaatttgacagg |
207 |
Q |
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| T |
49865411 |
attcggtaagttactactcaattttaatgcaatgtttaatat---ggatct-ctaaaaaattgtaagttgtgtatatcgggttgttattaa-ttggcagg |
49865317 |
T |
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| Q |
208 |
tgtgaactctgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcag |
281 |
Q |
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| T |
49865316 |
tgtgaactctgcccatttcaccgccttgaacgtcggatttgagaactcagccggtgccgcaaagcaccaagcag |
49865243 |
T |
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