View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14792_low_9 (Length: 265)
Name: NF14792_low_9
Description: NF14792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14792_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 46109162 - 46108907
Alignment:
| Q |
1 |
tttcacacccacaaacagaaaatactctctttttgctatatcattggagggtattgataaaacagttaaatattataaaattagagtatagggttaaact |
100 |
Q |
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| T |
46109162 |
tttcacacccacaaacagaaaatactctctttttgctatatcattggagagtattgataaaacagttaaatattataaaattagagtatagggttaaact |
46109063 |
T |
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| Q |
101 |
taaaatcaccataaaatagttataaagaaagaaatgtatcaaagtactaagtacctgctctccagatcagctatgtagttcacaaattgcgggatcctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46109062 |
taaaatcaccataaaatagttataaagaaagaaatgtatcaaagtactaagtacctgctctccagatcagctatgtagttcacaaattgcgggatcctat |
46108963 |
T |
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| Q |
201 |
cagatcttgagttacctgagaacaaaaggaagatactctgactcttatttcatctc |
256 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46108962 |
cagatcttgagttacctgagaacaaaaggaaaatactctgactcttatttcatctc |
46108907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 46109265 - 46109163
Alignment:
| Q |
1 |
tttcacacccacaaacagaaaatactctctttttgctatatcattggagggtattgataaaacagttaaatattataaaattagagtatagggttaaact |
100 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46109265 |
tttcacactcacaaacagaaaatactccctttttgctatatcattggagaatatcgataaaacagttaaatattataaaattagagtatagggttaaact |
46109166 |
T |
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| Q |
101 |
taa |
103 |
Q |
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||| |
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| T |
46109165 |
taa |
46109163 |
T |
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