View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_high_1 (Length: 546)
Name: NF14793_high_1
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_high_1 |
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| [»] scaffold0011 (1 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 19 - 537
Target Start/End: Complemental strand, 242392 - 241874
Alignment:
| Q |
19 |
acctcgtggcttcaaacgctacagccatgagctgtagcgtaacaccaaagacatcaaacttggcttcgccataggcagctacagcgacgccaagtgatat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242392 |
acctcgtggcttcaaacgctacagccatgagctgtagcgtaacaccaaagacatcaaacttggcttcgccataggcagctacagcgacgccaagtgatat |
242293 |
T |
|
| Q |
119 |
agaaaccatgttgatcatggtttcttttttaaacgactcttttttaaaagaaaccccgatggagtaaacggccacgggcataagagcttttagcatttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242292 |
agaaaccatgttgatcatggtttcttttttaaacgattcttttttaaaagaaaccccgatggagtaaacggccacgggcataagagcttttagcatttga |
242193 |
T |
|
| Q |
219 |
atgaatgaaactgacaagtaaatgtaagcagagtttgagaaccaaagggaaagagagtaaagtgcaccaatagggaccactgatttaaggtatgtgtcta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242192 |
atgaatgaaactgacaagtaaatgtaagcagagtttgagaaccaaagggaaagagagtaaagtgcaccaatagggaccactgatttaaggtatgtgtcta |
242093 |
T |
|
| Q |
319 |
aagacattgaaattgggtccactactttgaagatgtttacaaggatgtaagcaagggaggaacaaaaggccatgtggatcattgttagtgatattgggaa |
418 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242092 |
aagacattgaaattgggtcaactactttgaagatgtttacaaggatgtaagcaagggaggaacaaaaggccatgtggatcattgttagtgatattgggaa |
241993 |
T |
|
| Q |
419 |
tggccaattgtacattttttggtctaggatgtatttgttgtagacaattactgaaaaacttaagaaaatccatatggctacatatgtgtatgatagaagc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
241992 |
tggccaattgtacattttttggtctaggatgtatttgttgtagacaattactgagaaacttaagaaaatccatatggctacatatgtgtatgatagaagc |
241893 |
T |
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| Q |
519 |
acttttttcataacaccct |
537 |
Q |
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||||||||||| ||||||| |
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| T |
241892 |
acttttttcatcacaccct |
241874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 49574727 - 49574603
Alignment:
| Q |
389 |
catgtggatcattgttagtgatattgggaatggccaattgtacattttttggtctaggatgtatttgttgtagacaattactgaaaaacttaagaaaatc |
488 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||| |||| ||||| ||||||||||||||| || || || | || |||||| ||| |
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| T |
49574727 |
catgtggatcattgttagggaaattgggaatggccaattgtacatctttttgtctaagatgtatttgttgtaaacgataacagtgaatgataagaagatc |
49574628 |
T |
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| Q |
489 |
catatggctacatatgtgtatgata |
513 |
Q |
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||||| ||||| |||||||| |||| |
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| T |
49574627 |
catatcgctacgtatgtgtaggata |
49574603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 81 - 283
Target Start/End: Complemental strand, 49575035 - 49574833
Alignment:
| Q |
81 |
gcttcgccataggcagctacagcgacgccaagtgatatagaaaccatgttgatcatggtttcttttttaaacgactcttttttaaaagaaaccccgatgg |
180 |
Q |
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||||| ||||| ||||| ||||| || || | ||| || |||| |||||| | |||||| || |||||| | || |||||| | | | ||| ||||||| |
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| T |
49575035 |
gcttcaccataagcagcaacagcaacacccattgaaatggaaagcatgttaaacatggtatcatttttataagattcttttctgagaccaacgccgatgg |
49574936 |
T |
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| Q |
181 |
agtaaacggccacgggcataagagcttttagcatttgaatgaatgaaactgacaagtaaatgtaagcagagtttgagaaccaaagggaaagagagtaaag |
280 |
Q |
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| ||||| || || |||||||||||||| ||||||||||| || ||||| || | ||||||||||| || ||||| ||||| || |||||||| || || |
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| T |
49574935 |
aataaacagcgacaggcataagagctttaagcatttgaataaaagaaacagagagataaatgtaagcggaatttgataaccagagagaaagagaatagag |
49574836 |
T |
|
| Q |
281 |
tgc |
283 |
Q |
| |
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||| |
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| T |
49574835 |
tgc |
49574833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 460
Target Start/End: Original strand, 675 - 770
Alignment:
| Q |
365 |
gtaagcaagggaggaacaaaaggccatgtggatcattgttagtgatattgggaatggccaattgtacattttttggtctaggatgtatttgttgta |
460 |
Q |
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|||||| ||||| |||||||| |||||||| ||||| ||||| || || ||| | |||||||||||||| || | |||| ||||||||||||||| |
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| T |
675 |
gtaagcgagggaagaacaaaaagccatgtgaatcatggttagagagatcgggtaaggccaattgtacatcttacgatctaagatgtatttgttgta |
770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 460
Target Start/End: Original strand, 47014536 - 47014631
Alignment:
| Q |
365 |
gtaagcaagggaggaacaaaaggccatgtggatcattgttagtgatattgggaatggccaattgtacattttttggtctaggatgtatttgttgta |
460 |
Q |
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|||||| ||||| |||||||| |||||||| ||||| ||||| || || ||| | |||||||||||||| || | |||| ||||||||||||||| |
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| T |
47014536 |
gtaagcgagggaagaacaaaaagccatgtgaatcatggttagagagatcgggtaaggccaattgtacatcttacgatctaagatgtatttgttgta |
47014631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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