View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_high_17 (Length: 296)
Name: NF14793_high_17
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 33540023 - 33539755
Alignment:
| Q |
11 |
atcatcacaacataagttagaaaggtccaacacacacccgaacctgaaaaatagttacgcaaggagaaagcaaaccctggtagggcgtgtgagacctgcc |
110 |
Q |
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| T |
33540023 |
atcatcacaacataagttagaaaggtctaacacacacccgaacctgaaaa-tagttatgcaaggaggaaggaaaccctggtagggcgtgtgagacctgcc |
33539925 |
T |
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| Q |
111 |
ttacgcatatcaacaacgtgcacgcatccataaaggatagacaaccctctagcacacaaaaatgcatccaaatactttcaaggtggagacgaacctccat |
210 |
Q |
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| T |
33539924 |
tttagcgtaacaacaacgtgcacgcatccataaaggatagacaaccctctagcacaaaaaaatgcatccaaatacttttaaggtggagacgaacctccat |
33539825 |
T |
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| Q |
211 |
acatggattctaaccattattcaacatggacatggtccgtcaaaaaattaatggtttgtaacaaccattg |
280 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33539824 |
acaaggattctaaccattattcaacatggacatggtccgtcaaaaaattaatggtttgtaacaaccattg |
33539755 |
T |
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