View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_high_23 (Length: 254)
Name: NF14793_high_23
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 1183210 - 1183342
Alignment:
| Q |
16 |
ctgtgaagtggaaaatcctttgaagctgaaatttaataacaaacaaataagctattaatctagctaagaatcctatagcacatggaagaagtaaacacgt |
115 |
Q |
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| T |
1183210 |
ctgtgaagtagaaaatcctttgaagctgaaatttaataaca----aataagctattaatctagctaagaatcctatagcacatggaagaagtaaacacgt |
1183305 |
T |
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| Q |
116 |
tgaaactaggttatatttcatcatggaacaagtgaca |
152 |
Q |
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| T |
1183306 |
tgaaactaggttatatttcatcatggaacaagtgaca |
1183342 |
T |
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Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 1183580 - 1183662
Alignment:
| Q |
154 |
tttcattaattaatgaaaaccataacaaacttctaacactttcttctctctccataaccactttctcattctccatttttctc |
236 |
Q |
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| T |
1183580 |
tttcattaattaatgaaaaccataacaaacttcaaacactttcttctctctccataaccactttctcattctccatttttctc |
1183662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 19796065 - 19796018
Alignment:
| Q |
165 |
aatgaaaaccataacaaacttct-aacactttcttctctctccataac |
211 |
Q |
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| T |
19796065 |
aatgaaaatcataacaaacttttcaacactttcttctctctccataac |
19796018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 5243516 - 5243601
Alignment:
| Q |
67 |
ctattaatctagctaagaatcctatagcacatggaagaagtaaacacgttgaaactaggttatatttcatcatggaacaagtgaca |
152 |
Q |
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| T |
5243516 |
ctataaatttagctaacaatctaataacacatggtaggagaaaacacattgaaactaggtttcatttcataagggaacaagtgaca |
5243601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 32368201 - 32368156
Alignment:
| Q |
82 |
agaatcctatagcacatggaagaagtaaacacgttgaaactaggtt |
127 |
Q |
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| T |
32368201 |
agaatccaatagcacatggcaggagtaaacacattgaaactaggtt |
32368156 |
T |
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