View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14793_high_25 (Length: 241)

Name: NF14793_high_25
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14793_high_25
NF14793_high_25
[»] chr4 (2 HSPs)
chr4 (116-241)||(43007658-43007782)
chr4 (4-87)||(43007576-43007659)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 43007658 - 43007782
Alignment:
Q  116 tagcctgtagtatgaattgtgttaatgaaaaagtattaaaaattaggttcaaagtttacttctaactagcctagctatgactatnnnnnnnntattgtaa 215  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||| |    
T  43007658 tagcctgtagtatgaattgtgttaattaaaaagtattaaaaattaggttcaaagtttacttctaactagccttgctatgactataaaaaaaatattgt-a 43007756  T
Q  216 aaagacgtaacgcaatttgtcatttt 241  Q
    |||||||||||||||||| |||||||    
T  43007757 aaagacgtaacgcaatttatcatttt 43007782  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 43007576 - 43007659
Alignment:
Q  4 gaattagaaagtgaaatttttgacaaatgatcatgtgatgattgnnnnnnnngagaccgataaaaagatagatgaggctagtta 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  43007576 gaattagaaagtgaaatttttgacaaatgatcatgtgatgattgaaaaaaaagagaccgataaaaagatagatgaggctagtta 43007659  T

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