View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14793_high_26 (Length: 240)
Name: NF14793_high_26
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1182894 - 1182665
Alignment:
| Q |
1 |
ctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1182894 |
ctaggatcattcatgtatctactgatgatacttaccgcaaagcatatatcaggtctgttattgcataggcatctcagagatccaactatcggtttgaatt |
1182795 |
T |
|
| Q |
101 |
atgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182794 |
atgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttc |
1182695 |
T |
|
| Q |
201 |
tagcagttcaccaatgtacttctgatgatg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1182694 |
tagcagttcaccaatgtacttctgatgatg |
1182665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 26076337 - 26076111
Alignment:
| Q |
4 |
ggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatg |
103 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| |||||||||||||| |||||||| ||||||| |||||| || ||||| |||||| ||||||||| | |
|
|
| T |
26076337 |
ggatcattcatgaatctactgattatacttactgcaaagcatatatctggtctgttgttgcataagtatcttagtgatcccactatctgtttgaattcag |
26076238 |
T |
|
| Q |
104 |
tagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctag |
203 |
Q |
| |
|
||| || | || |||||||| ||||||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| || |
|
|
| T |
26076237 |
tagactccgccttttcttcattactacattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatctttcaag |
26076138 |
T |
|
| Q |
204 |
cagttcaccaatgtacttctgatgatg |
230 |
Q |
| |
|
|||||| |||||||||||||| ||||| |
|
|
| T |
26076137 |
cagttctccaatgtacttctgttgatg |
26076111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 4958602 - 4958828
Alignment:
| Q |
4 |
ggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatg |
103 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||||||||||| |||||||| ||||||| |||||||| ||||| |||||| ||||||||| | |
|
|
| T |
4958602 |
ggatcattcatgaatctactgatgatacttactgcaaagcatatatatggtctgttgttgcataagtatctcaatgatcccactatctgtttgaatttag |
4958701 |
T |
|
| Q |
104 |
tagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctag |
203 |
Q |
| |
|
||| || || || |||||||| || |||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| || |
|
|
| T |
4958702 |
tagactccaccttttcttcattactgcattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatatttcaag |
4958801 |
T |
|
| Q |
204 |
cagttcaccaatgtacttctgatgatg |
230 |
Q |
| |
|
|||||| |||||||||||||| ||||| |
|
|
| T |
4958802 |
cagttctccaatgtacttctgctgatg |
4958828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 12370752 - 12370527
Alignment:
| Q |
4 |
ggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatg |
103 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| |||||||||||||| |||||| | ||||||| ||||||||| ||||| ||||| ||||||||| | |
|
|
| T |
12370752 |
ggatcattcatgcatctactgatgatacttactgcaaagcatatatctggtctgctgttgcataagtatctcagtgatcccactatatgtttgaattcag |
12370653 |
T |
|
| Q |
104 |
tagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctag |
203 |
Q |
| |
|
||| || || || |||||||| || |||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| || |
|
|
| T |
12370652 |
tagactccaccttttcttcattactgcattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatctttcaag |
12370553 |
T |
|
| Q |
204 |
cagttcaccaatgtacttctgatgat |
229 |
Q |
| |
|
||||| |||||||||||||| |||| |
|
|
| T |
12370552 |
cagttatccaatgtacttctgctgat |
12370527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 5243146 - 5242957
Alignment:
| Q |
4 |
ggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatg |
103 |
Q |
| |
|
|||||||||||| |||| || |||||||||| |||||||||||||| ||||| |||| |||| |||||||| | ||| | |||| | |||||| | |
|
|
| T |
5243146 |
ggatcattcatgaatcttctaatgatacttactgcaaagcatatatctggtctactattacataagtatctcatgg-tcctattatctgcatgaattcag |
5243048 |
T |
|
| Q |
104 |
tagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaa |
194 |
Q |
| |
|
||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||||||| |
|
|
| T |
5243047 |
taggttctactttctcttcattgatgcattcatctagcttagcatttgtttcagaaggattagttgcagtgttacaatctaccatatcaaa |
5242957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 32368636 - 32368862
Alignment:
| Q |
4 |
ggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatg |
103 |
Q |
| |
|
|||||||||||| | |||| | |||||||||| |||||| ||||||| ||| |||| ||||||| ||| ||| ||||| |||||| ||||||||| | |
|
|
| T |
32368636 |
ggatcattcatgaacctaccgatgatacttactgcaaaggatatatctggtttgttgttgcataagtacatcaatgatcccactatctgtttgaattcag |
32368735 |
T |
|
| Q |
104 |
tagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctag |
203 |
Q |
| |
|
||| || |||| | |||||||| |||| ||||||| |||||||||||||||||| ||||| | || ||||||| || |||| | |||| |||| || |
|
|
| T |
32368736 |
taggttttactctttcttcattagtacactcatccaacttagcatttgtttcagatggattcgatgcaatgttgcagtcaatcatttgaaacctttcaag |
32368835 |
T |
|
| Q |
204 |
cagttcaccaatgtacttctgatgatg |
230 |
Q |
| |
|
|||||| ||||||||||| || ||||| |
|
|
| T |
32368836 |
cagttccccaatgtacttttgttgatg |
32368862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 9636687 - 9636620
Alignment:
| Q |
9 |
attcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctca |
76 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
9636687 |
attcatgtatctactggtgaagcttatttcaaagcatatgtcaggtctggtattgcataagtatctca |
9636620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University