View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_high_28 (Length: 238)
Name: NF14793_high_28
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43007913 - 43008134
Alignment:
| Q |
1 |
caattcattaaag-aaaaatacattcagagatatttttgtaactttaatatttttaaatattacaataacaacgtttgacacattgaaataccgaatact |
99 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007913 |
caattcattaaaggaaaaatacattcagagatatttttgtaactttaatacttttaaatattacaataacaacgtttgacacattgaaataccgaatact |
43008012 |
T |
|
| Q |
100 |
tgtttctcaatgtattaatgaataccataacactaaaactatctccttacttcaattattttttgtcgattggattggttttttatacttaattattatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43008013 |
tgtttctcaatgtattaatgaataccataacactaaaactatctccttacttcaattattttttgtcgattggattggttttttatacttaattattatt |
43008112 |
T |
|
| Q |
200 |
atgagtttctcaatgagcataa |
221 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
43008113 |
atgagtttctcaatgagcataa |
43008134 |
T |
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