View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_high_5 (Length: 463)
Name: NF14793_high_5
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 448
Target Start/End: Complemental strand, 49084527 - 49084100
Alignment:
| Q |
20 |
aataaaacccaattagagacagatatacaaaataaatacatactatctactaggcattcaaattttattattaacatcccttggaagcatttttgtaatt |
119 |
Q |
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| T |
49084527 |
aataaaacccaattagagacagatatacaaaataaatacatactatctactaggcattcaaattttattattaacatcccttggaagcatttttgtaatt |
49084428 |
T |
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| Q |
120 |
atgcttcaaattttgttattaacgtctctttgaagcattcacatacttccaaaaggtgtcacagctcaatggttagagcttgactgtgtaacctcgagac |
219 |
Q |
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| T |
49084427 |
atgcttcaaattttgttattaacgtctctttgaagcattcacatacttccaaaaggtgtcacagctcaatggttagagcttgactgtgtaacctcgagac |
49084328 |
T |
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| Q |
220 |
agagtttgaatctcccagggacaattgtaatatggtcattagtgtcattgttattaatgaaacttccccttccccattcnnnnnnnnctttctaaaaagt |
319 |
Q |
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| T |
49084327 |
agagtttgaatatcccagggacaattgtaatatggtcattagtgtcattgttattaataaaacttccccttccccattc-tttttttctttctaaaaagt |
49084229 |
T |
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| Q |
320 |
gttcttgcaatcgctgttgtctgattacaaagcaagccaatatatctgctgtctctcaagaagcttgacaaattttaccaccagttggtgcttccgaaga |
419 |
Q |
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| T |
49084228 |
attcttgcaatcgctgttgtctgattacaaagcaagccaatatatctgctgtctctcaagaagcttgacaaattttaccaccagttggtgcttccgaaga |
49084129 |
T |
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| Q |
420 |
ctataaaatataaatccatgttctctgtg |
448 |
Q |
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| T |
49084128 |
ctataaaatataaatccatgttctctgtg |
49084100 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 39305825 - 39305863
Alignment:
| Q |
239 |
gacaattgtaatatggtcattagtgtcattgttattaat |
277 |
Q |
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| T |
39305825 |
gacaattgtaaaatgatcattagtgtcattgttattaat |
39305863 |
T |
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