View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_low_1 (Length: 553)
Name: NF14793_low_1
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 415 - 547
Target Start/End: Complemental strand, 26427628 - 26427496
Alignment:
| Q |
415 |
aacatagatttgaattcatgtaaaatctctaaaatcttcctcaaatacaattttataattcctccatattaaaaagattatgtatttcgaagaaaattga |
514 |
Q |
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| T |
26427628 |
aacatagatttgaattcatgtaaaacctctaaaatcttcctcaaatacaactttttaattcctccatattaaaaggattatgtatttcgaagaaaattaa |
26427529 |
T |
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| Q |
515 |
aacccaaaacactttcacctctagaagtcctat |
547 |
Q |
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| T |
26427528 |
aacccaaaacacttacacctctggaagtcctat |
26427496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 26428165 - 26428059
Alignment:
| Q |
12 |
cactactctcattgggtggtgactggctagtgtcaaggtagggattgaaaaattgtgcataccacataaaatcgtattttggattcaatttgagcacaca |
111 |
Q |
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| T |
26428165 |
cactactctcattgggtggtgactggctagtgtcaaggtagggattgaaaaattgtgcataccacataaaatcgtattttggattcaatttgagcacaca |
26428066 |
T |
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| Q |
112 |
attttct |
118 |
Q |
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| T |
26428065 |
atgttct |
26428059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 26427968 - 26427879
Alignment:
| Q |
117 |
ctaaatgatgagaataacatattgagatcgtagctcaaaccgtacaagtttgctgcaacactgtcttccgcttaggactttgtttgggag |
206 |
Q |
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| T |
26427968 |
ctaaatgatgagaataacatattgagatcgtagctcaaaccgtacaagtttgctgcaacactgtcttccgcttaggactttgtttgggag |
26427879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 255 - 344
Target Start/End: Complemental strand, 26427795 - 26427699
Alignment:
| Q |
255 |
tgtttagaagtttgtatgggagagaaagatttttggagttccga-------aatatgataaaaattgtgaaatctaatttcacattgtttaaaagag |
344 |
Q |
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| T |
26427795 |
tgtttagaagtttgtatgggagggaaagacttttggagttccgattttcgaaatatgataaaaattgtgaaatctaatttcacattgtttaaaagag |
26427699 |
T |
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