View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_low_10 (Length: 441)
Name: NF14793_low_10
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_10 |
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| [»] scaffold0154 (2 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 76 - 441
Target Start/End: Original strand, 22357 - 22716
Alignment:
| Q |
76 |
aggattctaaatccaacctctacatataatatgcaatacttataccaactaaattaaatttacaagacaatataaatatttttctaatagaatggaatga |
175 |
Q |
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| T |
22357 |
aggattctaaatccaacctctacatataatatgcaatactcataccaactaaattaaattcacaagacagtataaatatttttctaatagactggaatga |
22456 |
T |
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| Q |
176 |
agatatttctgcacctacaccatcttttcttttctcatgctttgtataattcataccaaacgcggtttcccctcttaatttaaatcttgttatagtaatc |
275 |
Q |
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| T |
22457 |
agatatttctgcacctacaccatcttttcttttctcatgctttgtataattcataccaaacgcggtttcccctcttaatttaaatcttgttatagtaatc |
22556 |
T |
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| Q |
276 |
ttatacctatgcctttcccaagtgaataaactctagaatactttgatctcactcttacgttgccaaaattccacaatgatttcatttgtgtgagtgagtt |
375 |
Q |
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| T |
22557 |
ttatacctatgcctttcccaagtgaataaactctagaatactttgatctcactcttacgttgccaaaattccacaatga------ttgtgtgagtgagtt |
22650 |
T |
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| Q |
376 |
tggtaatagtcgattcttttctttccatcttcataagatcctagaacatatttaaatggtgctcca |
441 |
Q |
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| T |
22651 |
tggtaatagtcgattcttttctttccatcttcataagatcctagaacatatttaaatggtgctcca |
22716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 307 - 406
Target Start/End: Original strand, 12745 - 12839
Alignment:
| Q |
307 |
tctagaatactttgatctcactcttacgttgccaaaattccacaatgatttcatttgtgtgagtgagtttggtaatagtcgattcttttctttccatctt |
406 |
Q |
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| T |
12745 |
tctagaatactttgatctcactcctacgttgccaaaattccacaatg-----ctttgtttgagtgagtttggtaatggtcgattcttttctttccatctt |
12839 |
T |
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