View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14793_low_12 (Length: 427)

Name: NF14793_low_12
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14793_low_12
NF14793_low_12
[»] chr6 (8 HSPs)
chr6 (19-416)||(2126900-2127297)
chr6 (226-290)||(2367007-2367071)
chr6 (219-287)||(3245025-3245093)
chr6 (226-311)||(10188396-10188481)
chr6 (226-290)||(5863715-5863779)
chr6 (226-322)||(14254641-14254737)
chr6 (227-287)||(20611256-20611316)
chr6 (226-322)||(32052737-32052833)
[»] chr4 (10 HSPs)
chr4 (226-290)||(4766659-4766723)
chr4 (353-412)||(37926314-37926373)
chr4 (226-290)||(48459173-48459237)
chr4 (219-297)||(29527466-29527544)
chr4 (226-315)||(15987548-15987637)
chr4 (262-335)||(30034359-30034432)
chr4 (226-287)||(42907495-42907556)
chr4 (226-279)||(44317231-44317284)
chr4 (226-290)||(31918904-31918968)
chr4 (226-290)||(44887593-44887657)
[»] chr5 (9 HSPs)
chr5 (229-290)||(28569476-28569537)
chr5 (226-290)||(1218468-1218532)
chr5 (226-290)||(36579595-36579659)
chr5 (226-290)||(40517488-40517552)
chr5 (216-290)||(10822882-10822956)
chr5 (226-290)||(6093449-6093513)
chr5 (226-290)||(15889892-15889956)
chr5 (226-290)||(17853624-17853687)
chr5 (226-278)||(28045333-28045385)
[»] chr2 (5 HSPs)
chr2 (226-311)||(35336298-35336383)
chr2 (226-288)||(16227035-16227097)
chr2 (354-416)||(34214934-34214996)
chr2 (226-287)||(37473076-37473137)
chr2 (352-416)||(4961680-4961743)
[»] chr8 (9 HSPs)
chr8 (240-339)||(14687128-14687227)
chr8 (226-290)||(11255348-11255412)
chr8 (227-290)||(15174216-15174279)
chr8 (226-321)||(24927630-24927725)
chr8 (220-290)||(6388908-6388978)
chr8 (224-290)||(34301497-34301563)
chr8 (226-290)||(2076179-2076243)
chr8 (226-290)||(5858800-5858864)
chr8 (226-290)||(24870366-24870430)
[»] chr7 (15 HSPs)
chr7 (230-285)||(6558127-6558182)
chr7 (226-289)||(33840760-33840823)
chr7 (226-290)||(5567484-5567548)
chr7 (227-339)||(11473066-11473178)
chr7 (352-416)||(37217755-37217819)
chr7 (227-290)||(30839499-30839562)
chr7 (224-290)||(5376770-5376836)
chr7 (265-335)||(23475621-23475691)
chr7 (264-321)||(23533976-23534033)
chr7 (239-292)||(31393770-31393823)
chr7 (226-290)||(21702365-21702429)
chr7 (226-290)||(35074154-35074218)
chr7 (226-290)||(38152586-38152650)
chr7 (226-290)||(43507119-43507182)
chr7 (226-290)||(45886108-45886172)
[»] scaffold0519 (1 HSPs)
scaffold0519 (226-290)||(9983-10047)
[»] chr3 (7 HSPs)
chr3 (226-290)||(17146493-17146557)
chr3 (226-290)||(48391153-48391217)
chr3 (226-311)||(7470100-7470185)
chr3 (226-287)||(39728363-39728424)
chr3 (226-290)||(29284016-29284080)
chr3 (226-290)||(34025640-34025704)
chr3 (226-290)||(44107142-44107206)
[»] chr1 (10 HSPs)
chr1 (226-290)||(24710539-24710603)
chr1 (227-287)||(35077550-35077610)
chr1 (229-292)||(16433502-16433565)
chr1 (219-290)||(19892625-19892696)
chr1 (219-290)||(48024611-48024682)
chr1 (226-290)||(17134628-17134692)
chr1 (227-311)||(19572817-19572901)
chr1 (226-290)||(29871627-29871691)
chr1 (352-416)||(48538179-48538243)
chr1 (226-290)||(51421576-51421640)


Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 2127297 - 2126900
Alignment:
Q  19 ggttcagcaaggagtaattcgacaaaattcttgcacgtgtaagtggctgtggctcataggaaagtattcataatttgtttgtggggtgtgatttatgtgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2127297 ggttcagcaaggagtaattcgacaaaattcttgcacgtgtaagtggctgtggctcataggaaagtattcataatttgtttgtggggtgtgatttatgcgg 2127198  T
Q  119 tctattagggtgttggtccggaaatagatagagattcattaaatgtaggcataagaatgaggtaagatgaggacgaattttattttctcggttctcctat 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  2127197 tctattagggtgttggtccggaaatagatagaggttcattaaatgtaggcataagaatgaggtaagatgaggacggattttattttctcggttcccctat 2127098  T
Q  219 cctactatcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccctgtctca 318  Q
    |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2127097 cctactatcatatacttacatgttaccttactcatattcaacagagatgagaaatcgaatcttatccccgtctctgacgaatttgggtatccctgtctca 2126998  T
Q  319 tcccaatctccgcagtggatannnnnnnnaatgaaaataaaagtattttttagtcgagagcgcaatgttgcaacacattatctagcaaagagatgatg 416  Q
    |||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2126997 tcccaatctccgcagtggatattttttttaataaaaataaaagtattttttagtcgagagcgcaatgttgtaacacattatctagcaaagagatgatg 2126900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 2367007 - 2367071
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||||||||||| || |||||| |||||| |||||||||| |||||| |||||||||    
T  2367007 tcatatacttacatgttaccctactcatacccaacggggatgagaaattgaatctcatccccgtc 2367071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 3245025 - 3245093
Alignment:
Q  219 cctactatcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatcccc 287  Q
    |||||| |||||||||||| ||||| | ||| ||||  ||||||||||| |||||||||||| ||||||    
T  3245025 cctactctcatatacttacttgttatcctatccatatccaacggagatgcgaaatcgaatctcatcccc 3245093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 10188481 - 10188396
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccc 311  Q
    |||||||||||| ||||||| ||  ||||| |||||| |||||||||| |||||  ||||||||| |  |||| || |||||||||    
T  10188481 tcatatacttacctgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgagttcgggtatccc 10188396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 5863779 - 5863715
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| ||  ||||| |||||| |||||||||| |||||| |||||||||    
T  5863779 tcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtc 5863715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 14254641 - 14254737
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccctgtctcatccc 322  Q
    |||||||||||||||||||| || |||||   |||   |||||||||| |||||| ||||||||| |  |||  || ||||||||||| ||||||||    
T  14254641 tcatatacttacatgttaccctactcatatcgaacatggatgagaaattgaatctcatccccgtccccgacgggttcgggtatccctgcctcatccc 14254737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 20611316 - 20611256
Alignment:
Q  227 catatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatcccc 287  Q
    ||||||||||| ||||||| ||  ||||| |||||| |||||||||| |||||| ||||||    
T  20611316 catatacttacctgttaccatacccatacccaacggggatgagaaattgaatctcatcccc 20611256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 32052737 - 32052833
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccctgtctcatccc 322  Q
    ||||||||||||  |||||| ||  ||||  |||||| |||||||||| |||||| ||||||||||| ||||  ||  |||||||| | ||||||||    
T  32052737 tcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtctccaacgggttccggtatccccgcctcatccc 32052833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 4766723 - 4766659
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| ||| ||||| ||||||||||||||||| |||||| |||||||||    
T  4766723 tcatatacttacctgttaccctatccatacccaacggagatgagaaattgaatctcatccccgtc 4766659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 37926314 - 37926373
Alignment:
Q  353 aaataaaagtattttttagtcgagagcgcaatgttgcaacacattatctagcaaagagat 412  Q
    |||||||||||||||||||||  ||||||||||||| ||  |||||||||||||||||||    
T  37926314 aaataaaagtattttttagtcctgagcgcaatgttgtaatgcattatctagcaaagagat 37926373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 48459173 - 48459237
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| || ||||||||||||| |||||||||| |||||| |||||||||    
T  48459173 tcatatacttacccgttaccctactcatactcaacggggatgagaaattgaatctcatccccgtc 48459237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 29527466 - 29527544
Alignment:
Q  219 cctactatcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacg 297  Q
    |||||| | |||||||||||||||||| || | |||||  | || |||||||||| |||||| ||||||||||| ||||    
T  29527466 cctactttaatatacttacatgttaccctacttatacttgatggggatgagaaattgaatctcatccccgtctccaacg 29527544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 15987637 - 15987548
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccctgtc 315  Q
    |||||||||||| ||||||| ||  ||||  |||||| |||||||||| |||||| ||||||||| |  |||  || |||||||||||||    
T  15987637 tcatatacttacctgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtatccctgtc 15987548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 30034359 - 30034432
Alignment:
Q  262 gagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccctgtctcatcccaatctccgcagtg 335  Q
    ||||||||||||||||||| |||||| || |  |||  |||||||||||||| | |||||| ||||| ||||||    
T  30034359 gagatgagaaatcgaatctcatccccatcaccgacgggtttgggtatccctgccccatccccatctctgcagtg 30034432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 42907495 - 42907556
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatcccc 287  Q
    ||||||||||||  |||||| || ||||| ||| ||| ||||||||||||||||| ||||||    
T  42907495 tcatatacttacccgttaccctactcataatcagcggggatgagaaatcgaatctcatcccc 42907556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 44317231 - 44317284
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatc 279  Q
    |||||||||||| ||||||| ||  |||||||||||| |||||||||| |||||    
T  44317231 tcatatacttacctgttaccctacccatactcaacggggatgagaaattgaatc 44317284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 31918968 - 31918904
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| ||| ||||| |||||| |||||||||| |||||  |||||||||    
T  31918968 tcatatacttacccgttaccctatccatacccaacggggatgagaaattgaatcccatccccgtc 31918904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 44887593 - 44887657
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| ||| ||||  ||| || |||||||||| |||||| |||||||||    
T  44887593 tcatatacttacctgttaccctatccatatccaatggggatgagaaattgaatctcatccccgtc 44887657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 28569537 - 28569476
Alignment:
Q  229 tatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||||||| || |||||| ||||||||||||||||| |||||  |||||||||    
T  28569537 tatacttacatgttaccctactcatacccaacggagatgagaaattgaatcccatccccgtc 28569476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 1218468 - 1218532
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  ||||||||| |||||| |||||| |||||||||| |||||| ||| |||||    
T  1218468 tcatatacttacccgttaccttactcatacccaacggggatgagaaattgaatctcatctccgtc 1218532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 36579659 - 36579595
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||||||||||| ||  ||||| |||||| |||||||||| |||||| ||| |||||    
T  36579659 tcatatacttacatgttaccctacccatacccaacggggatgagaaattgaatctcatctccgtc 36579595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 40517488 - 40517552
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| ||  ||||| |||||| |||||||||| |||||| |||||||||    
T  40517488 tcatatacttacctgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtc 40517552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 10822956 - 10822882
Alignment:
Q  216 tatcctactatcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||| ||||||||||||||  |||||| || |||||| |||||  |||||||||||||| |  |||||||||    
T  10822956 tatcctattatcatatacttacccgttaccatactcatacccaacgaggatgagaaatcgaaccccatccccgtc 10822882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 6093513 - 6093449
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| ||  ||||  |||||| |||||||||| ||||| ||||||||||    
T  6093513 tcatatacttacttgttaccctacccatatccaacggggatgagaaattgaatcctatccccgtc 6093449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 15889892 - 15889956
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| ||  |||||  ||||| |||||||||| |||||| |||||||||    
T  15889892 tcatatacttacctgttaccctacccatacctaacggggatgagaaattgaatctcatccccgtc 15889956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 17853687 - 17853624
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| ||  ||||| |||||| |||||||||| |||||| |||||||||    
T  17853687 tcatatacttacctgttaccctacccatacccaacgg-gatgagaaattgaatctcatccccgtc 17853624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 28045333 - 28045385
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaat 278  Q
    |||||||||||| ||||||| ||  |||||||||||| |||||||||| ||||    
T  28045333 tcatatacttacctgttaccctacccatactcaacggggatgagaaattgaat 28045385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 35336298 - 35336383
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccc 311  Q
    |||||||||||||||||||| ||  ||||  ||| ||||||||||||| |||||| ||||||| | | |||| |||||||||||||    
T  35336298 tcatatacttacatgttaccctacccatatccaatggagatgagaaattgaatctcatccccgcccccaacggatttgggtatccc 35336383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 16227097 - 16227035
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccg 288  Q
    |||||||||||||||||||| || |||||| |||||| ||||| |||| ||| || |||||||    
T  16227097 tcatatacttacatgttaccctactcatacccaacggggatgaaaaattgaacctcatccccg 16227035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 34214996 - 34214934
Alignment:
Q  354 aataaaagtattttttagtcgagagcgcaatgttgcaacacattatctagcaaagagatgatg 416  Q
    ||||||||||||||| ||||  || |||||||||| ||  ||||||| |||||||||||||||    
T  34214996 aataaaagtatttttcagtcttgaacgcaatgttgtaatgcattatccagcaaagagatgatg 34214934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 37473137 - 37473076
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatcccc 287  Q
    |||||||||||| ||||||| ||  ||||| |||||| |||||||||| |||||| ||||||    
T  37473137 tcatatacttacctgttaccctacccatacccaacggggatgagaaattgaatctcatcccc 37473076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 4961743 - 4961680
Alignment:
Q  352 aaaataaaagtattttttagtcgagagcgcaatgttgcaacacattatctagcaaagagatgatg 416  Q
    ||||||||||||||||| || | | |||||||||||| |||||  |||| |||||||||||||||    
T  4961743 aaaataaaagtatttttcagcccaaagcgcaatgttgtaacac-ctatccagcaaagagatgatg 4961680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 14687128 - 14687227
Alignment:
Q  240 gttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccctgtctcatcccaatctccgcagtggata 339  Q
    |||||| ||| |||||||| | | ||||||||||||||||| ||||||||| || |||  || |||||||||| ||||||||| | | || |||||||||    
T  14687128 gttaccctatccatactcagcagggatgagaaatcgaatctcatccccgtccctgacgggttcgggtatccctatctcatccccaaccccacagtggata 14687227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 11255412 - 11255348
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||   |||||| ||| |||||||||||| |||||||||| |||||| |||||||||    
T  11255412 tcatatacttatccgttaccctatccatactcaacggggatgagaaattgaatctcatccccgtc 11255348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 15174279 - 15174216
Alignment:
Q  227 catatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||| ||||||| ||  |||| |||| || |||||||||| ||||||||||||||||    
T  15174279 catatacttacctgttaccctacccatattcaatggggatgagaaattgaatcttatccccgtc 15174216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 24927630 - 24927725
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccctgtctcatcc 321  Q
    ||||||||||||  |||||| ||  ||||| |||||| |||||||||| |||||  ||||||||| |  |||  || |||||||||||||||||||    
T  24927630 tcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatccctgtctcatcc 24927725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 6388978 - 6388908
Alignment:
Q  220 ctactatcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||| |||||||||||| ||||||| ||  ||||  || ||| ||||||||||||||||| |||||||||    
T  6388978 ctactctcatatacttacctgttaccctacccatatccagcggggatgagaaatcgaatctcatccccgtc 6388908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 34301563 - 34301497
Alignment:
Q  224 tatcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||||| ||||||| ||  ||||| |||||| |||||||||| |||||  |||||||||    
T  34301563 tatcatatacttacctgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtc 34301497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 2076243 - 2076179
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| ||  ||||| |||||| |||||||||| |||||| |||||||||    
T  2076243 tcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtc 2076179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 5858864 - 5858800
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||||||  |||| ||||||| |||||||||| ||| || |||||||||    
T  5858864 tcatatacttacccgttaccttacccatattcaacggggatgagaaattgaacctcatccccgtc 5858800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 24870430 - 24870366
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| ||  ||||| |||||| |||||||||| |||||| |||||||||    
T  24870430 tcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtc 24870366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 6558182 - 6558127
Alignment:
Q  230 atacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatcc 285  Q
    ||||||||||||||||||| ||||| |||| || ||||||||||||||||| ||||    
T  6558182 atacttacatgttaccttactcatattcaatggggatgagaaatcgaatctcatcc 6558127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 33840760 - 33840823
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgt 289  Q
    |||||||||||| ||||||| ||  |||||||||||| |||||||||||||| || ||||||||    
T  33840760 tcatatacttacctgttaccctacccatactcaacggggatgagaaatcgaacctcatccccgt 33840823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 5567548 - 5567484
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| || |||||  |||||| |||||||||| ||||| ||||||||||    
T  5567548 tcatatacttacctgttaccctactcatatccaacggggatgagaaatagaatcctatccccgtc 5567484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 11473178 - 11473066
Alignment:
Q  227 catatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccctgtctcatcccaatc 326  Q
    |||||||||||  |||||| || ||||||  | |||| ||||||||| ||| || ||||| |||||  |||  || ||||||||||| |||||||  |||    
T  11473178 catatacttaccagttaccctactcataccgagcggatatgagaaatagaaactcatccctgtctccgacgggttggggtatccctgcctcatcctcatc 11473079  T
Q  327 tccgcagtggata 339  Q
    |||||||||||||    
T  11473078 tccgcagtggata 11473066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 37217755 - 37217819
Alignment:
Q  352 aaaataaaagtattttttagtcgagagcgcaatgttgcaacacattatctagcaaagagatgatg 416  Q
    ||||||||||||||||||||||  |||| |||||||| ||  ||||||| ||||| |||||||||    
T  37217755 aaaataaaagtattttttagtcccgagcacaatgttgtaatgcattatccagcaaggagatgatg 37217819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 30839562 - 30839499
Alignment:
Q  227 catatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||| ||||||| ||   ||||||||||| |||||||||| |||||| |||||||||    
T  30839562 catatacttacttgttaccctaacaatactcaacggggatgagaaattgaatctcatccccgtc 30839499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 5376770 - 5376836
Alignment:
Q  224 tatcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||||  |||||| |||||||| ||||||| |||||||||| ||| |  |||||||||    
T  5376770 tatcatatacttacccgttaccctattcatattcaacggggatgagaaattgaaccgcatccccgtc 5376836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 23475691 - 23475621
Alignment:
Q  265 atgagaaatcgaatcttatccccgtctctaacgaatttgggtatccctgtctcatcccaatctccgcagtg 335  Q
    |||||||||||||||| |||||||||||| |||  || ||||||||| | |||||||  ||| ||||||||    
T  23475691 atgagaaatcgaatctcatccccgtctctgacgggttcgggtatccccgcctcatcctcatccccgcagtg 23475621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 23534033 - 23533976
Alignment:
Q  264 gatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccctgtctcatcc 321  Q
    ||||||||||||||||| |||||||||||  |||  || ||||||||||| |||||||    
T  23534033 gatgagaaatcgaatctcatccccgtctccgacgggttcgggtatccctgcctcatcc 23533976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 31393823 - 31393770
Alignment:
Q  239 tgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctc 292  Q
    ||||||| || |||||  ||||||||||||||||| |||||| |||||||||||    
T  31393823 tgttaccctactcatatccaacggagatgagaaattgaatctcatccccgtctc 31393770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 21702365 - 21702429
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  | |||| ||  |||||||||||| |||||||||| ||||| ||||||||||    
T  21702365 tcatatacttacccgctaccctacccatactcaacggggatgagaaattgaatcctatccccgtc 21702429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 35074154 - 35074218
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| ||  ||||| |||||| ||||||||||||||||  |||||||||    
T  35074154 tcatatacttacccgttaccctacccatacccaacggggatgagaaatcgaatcccatccccgtc 35074218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 38152586 - 38152650
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| ||  |||||||||||| |||||||||| |||||  |||||||||    
T  38152586 tcatatacttacccgttaccctacccatactcaacggggatgagaaattgaatcccatccccgtc 38152650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 43507119 - 43507182
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| ||  |||||||||||| ||||| |||| |||||| |||||||||    
T  43507119 tcatatacttacctgttaccctacccatactcaacgg-gatgacaaattgaatctcatccccgtc 43507182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 45886172 - 45886108
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| ||  ||||  |||||| |||||||||| |||||| |||||||||    
T  45886172 tcatatacttacctgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtc 45886108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 9983 - 10047
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||   |||||| ||| |||||||||||| |||||||||| |||||| |||||||||    
T  9983 tcatatacttatccgttaccctatccatactcaacggggatgagaaattgaatctcatccccgtc 10047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 17146557 - 17146493
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| ||  |||||||||||||||||| |||| |||||| |||||||||    
T  17146557 tcatatacttacccgttaccctacccatactcaacggagatgacaaattgaatctcatccccgtc 17146493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 48391217 - 48391153
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||||||  |||||||||||  ||| |||||| |||||| |||||||||    
T  48391217 tcatatacttacctgttaccttacccatactcaacgaggattagaaattgaatctcatccccgtc 48391153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 7470185 - 7470100
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccc 311  Q
    ||||||||||||  |||||| ||  ||||| |||||| |||||||||| |||||| ||||||||| |  |||  ||||||||||||    
T  7470185 tcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtccccgacgggtttgggtatccc 7470100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 39728363 - 39728424
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatcccc 287  Q
    |||||||||||| ||||||| ||  ||||| |||||| |||||||||| |||||| ||||||    
T  39728363 tcatatacttacctgttaccctacccatacccaacggggatgagaaattgaatctcatcccc 39728424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 29284016 - 29284080
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| ||| ||||| |||||| |||||||||| |||||  |||||||||    
T  29284016 tcatatacttacccgttaccctatccatacccaacggggatgagaaattgaatcccatccccgtc 29284080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 34025640 - 34025704
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| ||||||||  |||||| |||||||||| |||||| | |||||||    
T  34025640 tcatatacttacccgttaccctattcatatccaacggggatgagaaattgaatctcagccccgtc 34025704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 44107206 - 44107142
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| ||  ||||| |||||| |||||||||| |||||| |||||||||    
T  44107206 tcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtc 44107142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 24710539 - 24710603
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| ||   ||||||||||| |||||||||| |||||| |||||||||    
T  24710539 tcatatacttacctgttaccctacctatactcaacggggatgagaaattgaatctcatccccgtc 24710603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 35077610 - 35077550
Alignment:
Q  227 catatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatcccc 287  Q
    ||||||||||| ||||||| ||  ||||| ||||||||||||||||| |||||| ||||||    
T  35077610 catatacttacctgttaccctacccatacccaacggagatgagaaattgaatctcatcccc 35077550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 16433565 - 16433502
Alignment:
Q  229 tatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctc 292  Q
    |||||||||  |||||||||| ||||  ||||||||||||||||| ||| || |||||||||||    
T  16433565 tatacttacccgttaccttatccatatccaacggagatgagaaattgaacctcatccccgtctc 16433502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 19892625 - 19892696
Alignment:
Q  219 cctactatcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||| |||||||||||| ||||||| ||  |||||  ||||| |||||||||| |||||| |||||||||    
T  19892625 cctactctcatatacttacttgttaccctacccatacataacggggatgagaaattgaatctcatccccgtc 19892696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 48024682 - 48024611
Alignment:
Q  219 cctactatcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||| |||||||||||  ||||| | |||||||||||||||  ||| |||||| |||||| |||||||||    
T  48024682 cctactctcatatacttatttgttatcctattcatactcaacgaggataagaaattgaatctcatccccgtc 48024611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 17134628 - 17134692
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| || ||||||||||| | |||||||||| |||||| ||| |||||    
T  17134628 tcatatacttacccgttaccctactcatactcaacagggatgagaaattgaatctcatctccgtc 17134692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 19572901 - 19572817
Alignment:
Q  227 catatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtctctaacgaatttgggtatccc 311  Q
    |||||||||||  |||||| ||  ||||| |||||| |||||||||| |||||| ||||||||| |  |||  ||||||||||||    
T  19572901 catatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtccccgacgggtttgggtatccc 19572817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 29871691 - 29871627
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    |||||||||||| ||||||| || ||||||||||| | |||||||||| ||  | ||||||||||    
T  29871691 tcatatacttacttgttaccctactcatactcaactgggatgagaaattgagccctatccccgtc 29871627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 48538243 - 48538179
Alignment:
Q  352 aaaataaaagtattttttagtcgagagcgcaatgttgcaacacattatctagcaaagagatgatg 416  Q
    ||||||||||||||||  ||||  ||||  ||||||| || ||||||||||||||| ||||||||    
T  48538243 aaaataaaagtattttgcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 48538179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 51421576 - 51421640
Alignment:
Q  226 tcatatacttacatgttaccttattcatactcaacggagatgagaaatcgaatcttatccccgtc 290  Q
    ||||||||||||  |||||| || |||||  |||||| |||||||||| |||||| |||||||||    
T  51421576 tcatatacttacccgttaccctactcatatccaacggggatgagaaattgaatctcatccccgtc 51421640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University