View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_low_13 (Length: 414)
Name: NF14793_low_13
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 14757824 - 14757579
Alignment:
| Q |
16 |
catgaagtacaaatacggttcataatcggatcattattacggaatgtgtgatccttattgaggtgaaatagcccaaacagaccaataatattcaagcaaa |
115 |
Q |
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| T |
14757824 |
catgaagtacaaatacgattcataatcggatcgttattacagaatgtgtgatccttattgaggtgaaatagcccaaacagaccaataatattcaagcaaa |
14757725 |
T |
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| Q |
116 |
tcacgttcatcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactcttt |
215 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14757724 |
tcatgttcgtcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactcttt |
14757625 |
T |
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| Q |
216 |
catcattcttgaagttggatgaggcataataccacaacctacccca |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14757624 |
catcattcttgaagttggatgaggcataataccacaacctacccca |
14757579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 260 - 398
Target Start/End: Complemental strand, 14757520 - 14757382
Alignment:
| Q |
260 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14757520 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
14757421 |
T |
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| Q |
360 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
398 |
Q |
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| T |
14757420 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
14757382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 3614001 - 3613756
Alignment:
| Q |
16 |
catgaagtacaaatacggttcataatcggatcattattacggaatgtgtgatccttattgaggtgaaatagcccaaacagaccaataatattcaagcaaa |
115 |
Q |
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|||||||||||||||||||||||| || ||||||||| || ||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||| |
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| T |
3614001 |
catgaagtacaaatacggttcatattcagatcattataacagaatgtgcgatccttattgaggtgaagtagcccaaacagaccgataacattcaagcaaa |
3613902 |
T |
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| Q |
116 |
tcacgttcatcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactcttt |
215 |
Q |
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||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |
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| T |
3613901 |
tcacgttcatcggttttccagaacatgtctctttctcccaagctaaacaagccctaacattctcttgatttgcaaaagaatccgtccaacaatactcttt |
3613802 |
T |
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| Q |
216 |
catcattcttgaagttggatgaggcataataccacaacctacccca |
261 |
Q |
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| T |
3613801 |
caaggttcttgaagttggatgaggcataataccagaacctacccca |
3613756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 260 - 398
Target Start/End: Complemental strand, 3613697 - 3613559
Alignment:
| Q |
260 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
359 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3613697 |
caagttgttgcatactgtattcatttatcttcaaattcaaccgattactagcgacatcgttgagattcctccaagcaacatcagtgacagacatgttatc |
3613598 |
T |
|
| Q |
360 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
398 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
3613597 |
agcattcaaaatgcccatatcacgtacatcaaagttcat |
3613559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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