View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_low_14 (Length: 411)
Name: NF14793_low_14
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 11878655 - 11879036
Alignment:
| Q |
15 |
aagttttacattaaaatcaattttaaagacaaaattaattctaatgatgaacttcaaacataccaccaaaaacaattttaaaaatctttataatcacttt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11878655 |
aagttttacattaaaatcaattttaaagacaaaattaattctaatgatgaacttcaaacataccaccaaaaacaattttaaaaatctttataatcacttt |
11878754 |
T |
|
| Q |
115 |
tgcctctcaaaattgaatcaaaacaagcacttactagtgtctaaattaaatcactcatattagatcaaccaaatccaaaattcagatatactctctatct |
214 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11878755 |
tgcctctcaaaattgaatccaaacaagcact-----------aaattaaatcactcatattagatcaaccaaatccaaaattcagatatactctctatct |
11878843 |
T |
|
| Q |
215 |
acttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcat |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11878844 |
acttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcat |
11878943 |
T |
|
| Q |
315 |
gatctatgacatcaagttgatgaaaaacaacaagaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctc |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11878944 |
gatctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctc |
11879036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 11893662 - 11894043
Alignment:
| Q |
15 |
aagttttacattaaaatcaattttaaagacaaaattaattctaatgatgaacttcaaacataccaccaaaaacaattttaaaaatctttataatcacttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11893662 |
aagttttacattaaaatcaattttaaagacaaaattaattctaatgatgaacttcaaacataccaccaaaaacaattttaaaaatctttataatcacttt |
11893761 |
T |
|
| Q |
115 |
tgcctctcaaaattgaatcaaaacaagcacttactagtgtctaaattaaatcactcatattagatcaaccaaatccaaaattcagatatactctctatct |
214 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11893762 |
tgcctctcaaaattgaatccaaacaagcact-----------aaattaaatcactcatattagatcaaccaaatccaaaattcagatatactctctatct |
11893850 |
T |
|
| Q |
215 |
acttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11893851 |
acttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcat |
11893950 |
T |
|
| Q |
315 |
gatctatgacatcaagttgatgaaaaacaacaagaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctc |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11893951 |
gatctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctc |
11894043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 11896071 - 11896452
Alignment:
| Q |
15 |
aagttttacattaaaatcaattttaaagacaaaattaattctaatgatgaacttcaaacataccaccaaaaacaattttaaaaatctttataatcacttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11896071 |
aagttttacattaaaatcaattttaaagacaaaattaattctaatgatgaacttcaaacataccaccaaaaacaattttaaaaatctttataatcacttt |
11896170 |
T |
|
| Q |
115 |
tgcctctcaaaattgaatcaaaacaagcacttactagtgtctaaattaaatcactcatattagatcaaccaaatccaaaattcagatatactctctatct |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11896171 |
tgcctctcaaaattgaatccaaacaagcact-----------aaattaaatcactcatattagatcaaccaaatccaaaattcagatatactctctatct |
11896259 |
T |
|
| Q |
215 |
acttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11896260 |
acttatacaaactttgatataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcat |
11896359 |
T |
|
| Q |
315 |
gatctatgacatcaagttgatgaaaaacaacaagaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11896360 |
gatctatgacatcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctc |
11896452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 233 - 407
Target Start/End: Original strand, 11875253 - 11875427
Alignment:
| Q |
233 |
ataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagtt |
332 |
Q |
| |
|
||||||||||| | ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11875253 |
ataaatttgaactttcttaccaagatatctagtttaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagtt |
11875352 |
T |
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| Q |
333 |
gatgaaaaacaacaagaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctc |
407 |
Q |
| |
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| || ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11875353 |
gttggaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctc |
11875427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 248 - 407
Target Start/End: Original strand, 11868804 - 11868963
Alignment:
| Q |
248 |
cttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaaacaacaa |
347 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
11868804 |
cttaccaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatactcgcagcatctatgacatcaagttgatgaaaaacaacaa |
11868903 |
T |
|
| Q |
348 |
gaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctc |
407 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11868904 |
gaccaggcagagaaagatgtttcagcttctcaacagcttcaagacctctcttttcatctc |
11868963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 25859195 - 25859029
Alignment:
| Q |
241 |
gaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgatgaaaa |
340 |
Q |
| |
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||||| || |||||| | ||| || |||||||||||||| |||| |||||| |||| |||| ||||||| | |||||||||||||||||||||| ||| |
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| T |
25859195 |
gaattatcataccaagatatcaagtttaccaaattgatttttgaggaaatctgcaaaagatccaatacttgtaggatctatgacatcaagttgatggaaa |
25859096 |
T |
|
| Q |
341 |
acaacaagaccaggcagagaaagctgtttcagcttctcaacagcttcaagacctctcttttcatctc |
407 |
Q |
| |
|
|| ||| | ||||| || | ||| | |||| || ||||||||||||||||||||||| ||||||| |
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| T |
25859095 |
accacatggccaggaagtgcaagatccttcaatttatcaacagcttcaagacctctcttctcatctc |
25859029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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