View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_low_15 (Length: 389)
Name: NF14793_low_15
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 51222846 - 51223236
Alignment:
| Q |
1 |
cctttgaaaacaacttcaattgaatgcaatattgcgctatctaattcaatcaaaatatatagaagaactaatgcatgagtaattag-aaaacaacccatt |
99 |
Q |
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| T |
51222846 |
cctttgaaaacaacttcaattgaatgcaatattgcgctatctaattcaatcaaaatatatagaagaactaatgcatgagtaattagaaaaacaacccatt |
51222945 |
T |
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| Q |
100 |
aaaaaagtcataaagcctctaaatatgccacctctggttgccatttcaggtctatccacgccatctgaattacaattgaataatttatagaaaaatttta |
199 |
Q |
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| T |
51222946 |
aaaaaagtcataaagcctctaaatatgccacctctagttgccatttcaggtttatccaccccatctgaattacacttgaataattcatagataaattttg |
51223045 |
T |
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| Q |
200 |
cattg-nnnnnnncacatttttaacttttgaaaagtagaatacacagtttctaaggtagtatttctttttgtaatttcttaactagtgttttaatggtac |
298 |
Q |
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| T |
51223046 |
cattgaaaaaaaatacatttttaacttttgaaaagaagaatacacggtttctaaggtagtatttctttttgtaatttcttaactagtgtcttaatggtac |
51223145 |
T |
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| Q |
299 |
ttattagcatttttctttctgcaatacaaaattaattgttgataaatctaaagtaatatcagccaaaaatatattgttagtttaaaatatg |
389 |
Q |
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| T |
51223146 |
ttattagtattttcctttctgcaatacaaaattaattgttgataaatctaaagtaatatcagccaaaaatatattgttagcttaaaatatg |
51223236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 7463739 - 7463791
Alignment:
| Q |
216 |
tttttaacttttgaaaagtagaatacacagtttctaaggtagtatttcttttt |
268 |
Q |
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| T |
7463739 |
tttttaatttttgaaaagtagcatacacaatttttaaggtattatttcttttt |
7463791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 14148317 - 14148383
Alignment:
| Q |
215 |
atttttaacttttgaaaagtagaatacacagtttctaaggtagtatttctttttgtaatttcttaac |
281 |
Q |
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| T |
14148317 |
atttttaactttcaaaaagtagaatacacaatttccaagataatatgtctttttataattccttaac |
14148383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 26440150 - 26440114
Alignment:
| Q |
216 |
tttttaacttttgaaaagtagaatacacagtttctaa |
252 |
Q |
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| T |
26440150 |
tttttaacttttaaaaagtagaatacacaatttctaa |
26440114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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