View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14793_low_16 (Length: 369)

Name: NF14793_low_16
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14793_low_16
NF14793_low_16
[»] chr8 (2 HSPs)
chr8 (12-353)||(41121684-41122025)
chr8 (12-106)||(5737571-5737665)
[»] chr6 (1 HSPs)
chr6 (12-116)||(31239510-31239614)
[»] chr4 (1 HSPs)
chr4 (31-106)||(19050665-19050740)
[»] chr7 (1 HSPs)
chr7 (20-104)||(12221775-12221859)
[»] chr2 (2 HSPs)
chr2 (12-66)||(38983227-38983281)
chr2 (12-66)||(38983415-38983469)
[»] chr5 (1 HSPs)
chr5 (132-176)||(14920301-14920345)


Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 353
Target Start/End: Complemental strand, 41122025 - 41121684
Alignment:
Q  12 agagatgaaaaagctcaaggccctcatattgctccaaagcaaggagcttatgatacatgcttgttgagagggagctgccaagtttgcaatacagaataaa 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  41122025 agagatgaaaaagctcagggccctcatattgctccaaagcaaggagcttatgatacatggttgttgagaaggagctgccaagtttgcaatacagaataaa 41121926  T
Q  112 acatgcaaataatagaaatgtgatgttatagctgcaacttcattattctatacaacaacaaaatggcataaccaacttcattgaactggtacatcagaag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41121925 acatgcaaataatagaaatgtgatgttatagctgcaacttcattattctatacaacaacaaaatggcataaccaacttcattgaactggtacatcagaag 41121826  T
Q  212 acaaaaatctttatagctttgaaggaagaatattaaattttagaaatcaagttcacatgtcagcaatgttgcaaagcaaagagagaatctaaattcacat 311  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41121825 acaaaaatctttatagctttgaaggaagaatattaaattttggaaatcaagttcacatgtcagcaatgttgcaaagcaaagagagaatctaaattcacat 41121726  T
Q  312 gtcagcaatcaagtttggaaatgctactacattaaacaagtg 353  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41121725 gtcagcaatcaagtttggaaatgctactacattaaacaagtg 41121684  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 5737571 - 5737665
Alignment:
Q  12 agagatgaaaaagctcaaggccctcatattgctccaaagcaaggagcttatgatacatgcttgttgagagggagctgccaagtttgcaatacaga 106  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||||||| ||||    
T  5737571 agagatgaaaaagctcaaggccctcgtattgctccaaagcaaggagctcatgatacatgtttattgagagggaggtgccaagtttgcaattcaga 5737665  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 31239510 - 31239614
Alignment:
Q  12 agagatgaaaaagctcaaggccctcatattgctccaaagcaaggagcttatgatacatgcttgttgagagggagctgccaagtttgcaatacagaataaa 111  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||| ||    
T  31239510 agagatgaaaaagttcaaggccctcctattgctccaaagcaaggagctcatgatacaagtttgttgagagggagctgccaagtttgcaatacataattaa 31239609  T
Q  112 acatg 116  Q
    |||||    
T  31239610 acatg 31239614  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 19050740 - 19050665
Alignment:
Q  31 gccctcatattgctccaaagcaaggagcttatgatacatgcttgttgagagggagctgccaagtttgcaatacaga 106  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  19050740 gccctcatattgctccaaagcaaggagctcatgatacatgtttgttgagagggagctgccaagtttgcaatacaga 19050665  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 12221859 - 12221775
Alignment:
Q  20 aaaagctcaaggccctcatattgctccaaagcaaggagcttatgatacatgcttgttgagagggagctgccaagtttgcaataca 104  Q
    |||||||| || ||||||||||||||| |||||||||| | | |||||||| ||||| |||||||||||||||||||||||||||    
T  12221859 aaaagctcgagaccctcatattgctcctaagcaaggagttcacgatacatgtttgttaagagggagctgccaagtttgcaataca 12221775  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 38983227 - 38983281
Alignment:
Q  12 agagatgaaaaagctcaaggccctcatattgctccaaagcaaggagcttatgata 66  Q
    |||||||||||||||||| |||||||||||| | ||||| |||||||| ||||||    
T  38983227 agagatgaaaaagctcaacgccctcatattgtttcaaaggaaggagctcatgata 38983281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 38983469 - 38983415
Alignment:
Q  12 agagatgaaaaagctcaaggccctcatattgctccaaagcaaggagcttatgata 66  Q
    ||||||||||||||||||  ||||||||||| ||||||| |||||||| ||||||    
T  38983469 agagatgaaaaagctcaacaccctcatattgttccaaaggaaggagctcatgata 38983415  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 14920345 - 14920301
Alignment:
Q  132 tgatgttatagctgcaacttcattattctatacaacaacaaaatg 176  Q
    |||| |||||||| |||||||||||||||| |||| |||||||||    
T  14920345 tgatattatagctccaacttcattattctaaacaataacaaaatg 14920301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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