View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14793_low_18 (Length: 315)

Name: NF14793_low_18
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14793_low_18
NF14793_low_18
[»] scaffold0699 (1 HSPs)
scaffold0699 (31-315)||(2141-2424)


Alignment Details
Target: scaffold0699 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 31 - 315
Target Start/End: Original strand, 2141 - 2424
Alignment:
Q  31 tatttacacacactatcaatgtcaaataccatcacaaaatgagttcatgatcacacattgtgtgatcagaatgttatctttaagccttnnnnnnnnnnnn 130  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||                
T  2141 tatttacacacactatcaatgtcaaataccaacacaaaatgagttcatgatcacacattgtgtgatcagaattttatctttaagccttaaaaaaaaaaa- 2239  T
Q  131 gttgtcttaagaaccagctccaagagggggatttaataatacccaccaataagagtacaaatgtctccggctcccaagaagatgctagcattacgggatc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  2240 gttgtcttaagaaccagctccaagagggggatttaataatacccaccaataagagtacaaatgtctctggctcccaagaagatgctagcattatgggatc 2339  T
Q  231 tctccacaaggaccacacaacaatttatcagacaaatatgaaacctaacccaagtccaaccaaataataagcagacgcgttaaat 315  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||    
T  2340 tctccacaaggatcacacaacaatttatcagacaaatatgaaacctaacccaaatccaactaaataataagcagactcgttaaat 2424  T

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