View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14793_low_19 (Length: 314)
Name: NF14793_low_19
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_19 |
 | |
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| [»] scaffold0557 (2 HSPs) |
| | |
|
| [»] scaffold0115 (2 HSPs) |
| | |
|
| [»] scaffold0442 (2 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 21006232 - 21005948
Alignment:
| Q |
18 |
catttgaggctgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006232 |
catttgaggctgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctc |
21006133 |
T |
|
| Q |
118 |
ctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgtttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006132 |
ctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgtttt |
21006033 |
T |
|
| Q |
218 |
gttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
302 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
21006032 |
gttgaacactttcaggatagatttgacgctgcatgttttgattgacattgtgatttggaatcatagtactcatgttgttcttctc |
21005948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 20903516 - 20903237
Alignment:
| Q |
18 |
catttgaggctgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctc |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||| || ||||||||||||| |||||||| |
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|
| T |
20903516 |
catttgatgctgcatgttttggttaaatcctggagttgcaaccatgttcataactggcattggagtactcatcattgtagtattcatcatggtgttgctc |
20903417 |
T |
|
| Q |
118 |
ctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgtttt |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20903416 |
ttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttct |
20903317 |
T |
|
| Q |
218 |
gttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttc |
297 |
Q |
| |
|
||||||||||| | | ||||||||| | |||||| ||| ||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
20903316 |
gttgaacacttccggtgtagatttgatgttgcatgctttgattaacaccctgatttggaatcatagtactcatgttgttc |
20903237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 20922116 - 20921838
Alignment:
| Q |
18 |
catttgaggctgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctc |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||| ||| |
|
|
| T |
20922116 |
catttgatgctgcatgttttggttaaatccgggagtggcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgtttctc |
20922017 |
T |
|
| Q |
118 |
ctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgtttt |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20922016 |
ttctgttgttgatgaacacttgaagtgtagacctgaggatgcaagttt------acactaggagttggaaccatagtactcatgatggtgttcttgttct |
20921923 |
T |
|
| Q |
218 |
gttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
302 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||| ||| ||||| | |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
20921922 |
gttgaacacttccagtgtagatttgacgatgcatgctttgattgataccgtgatttggaatcatagtactcatgttgttcttctc |
20921838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 21005900 - 21005850
Alignment:
| Q |
206 |
tgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttt |
256 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
21005900 |
tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgtttt |
21005850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 41336674 - 41336390
Alignment:
| Q |
18 |
catttgaggctgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctc |
117 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||||||| |
|
|
| T |
41336674 |
catttgatgctgcatgttttggttaaatacgggagttgcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctc |
41336575 |
T |
|
| Q |
118 |
ctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgtttt |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41336574 |
ttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttct |
41336475 |
T |
|
| Q |
218 |
gttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
302 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
41336474 |
gttgaacacttccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttcttctc |
41336390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 55 - 302
Target Start/End: Original strand, 5728 - 5981
Alignment:
| Q |
55 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
154 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
5728 |
gcaaccatgttcataacttgcattaaagtactcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgaa |
5827 |
T |
|
| Q |
155 |
gttg------catgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg |
248 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || |
|
|
| T |
5828 |
actgaatgtgcatgttttgattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgacgttg |
5927 |
T |
|
| Q |
249 |
catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
302 |
Q |
| |
|
|||| ||| ||| ||| || ||||||||||||||||||| |||||||| |||| |
|
|
| T |
5928 |
catgctttgattaacaccgtaatttggaatcatagtactcatgttgttcttctc |
5981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 303
Target Start/End: Complemental strand, 5324 - 5070
Alignment:
| Q |
55 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
154 |
Q |
| |
|
|||||||||||| ||||||| ||| ||| |||||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
5324 |
gcaaccatgttcgtaactggcattaaagcactcatcattgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgag |
5225 |
T |
|
| Q |
155 |
gt------tgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg |
248 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
5224 |
acagcacgtgcatgttttcattaacacttggagttggaaccatagtactcacgatggtgttcttgttttgttgaacacttctagggtagatttgacgcta |
5125 |
T |
|
| Q |
249 |
catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctca |
303 |
Q |
| |
|
|||| ||| ||| ||| |||||||| ||||||||||| || |||||||| ||||| |
|
|
| T |
5124 |
catgctttaattaacactgtgatttagaatcatagtattcatgttgttcttctca |
5070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 55 - 302
Target Start/End: Complemental strand, 47177 - 46924
Alignment:
| Q |
55 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
154 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||| || |||||| ||||| || |||||||||||| ||||||| |
|
|
| T |
47177 |
gcaaccatgttcataactggcattaaagtactcatcgttgaagtattcatcatggtgttactgttctgttgttgattaaaacttgaagtgtagacttgag |
47078 |
T |
|
| Q |
155 |
gttgcatgt------tagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg |
248 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||| ||||||||||| || |
|
|
| T |
47077 |
actgcatgtgcatgttttgattaacactaggagttggaaccatagtactcacgatgatgttcttgtattgttgaacacttccagggtagatttgacgttg |
46978 |
T |
|
| Q |
249 |
catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
302 |
Q |
| |
|
|||| ||| ||| ||| ||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
46977 |
catgctttgattaacaccgtgatttggaatcatggtactcatgttgttcttctc |
46924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 55 - 245
Target Start/End: Original strand, 47840 - 48039
Alignment:
| Q |
55 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
154 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| ||||||| |
|
|
| T |
47840 |
gcaaccatgttcataactggcattaaagtaatcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagcgtagacttgag |
47939 |
T |
|
| Q |
155 |
---------gttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacg |
245 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
47940 |
actgctgcatgtgcatgttttgattaacactaggagttggaaccataatactcacgatggtgttcttgttttgttgaacacttacaagctagatttgacg |
48039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 297
Target Start/End: Original strand, 9160 - 9370
Alignment:
| Q |
93 |
tgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgt------tagaattaacactaggagttgga |
186 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
9160 |
tgaagtattcatcatggtgttgctcttctgttcttgattaacacttgaagtgtagacttgaaactgcatgtgcatgttttgattaacactaggagttgga |
9259 |
T |
|
| Q |
187 |
accatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtac |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||||| ||| ||| ||| || ||||||||||||||||| |
|
|
| T |
9260 |
accatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacaccgtaatttggaatcatagtac |
9359 |
T |
|
| Q |
287 |
tcgtgttgttc |
297 |
Q |
| |
|
|| |||||||| |
|
|
| T |
9360 |
tcatgttgttc |
9370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 55 - 303
Target Start/End: Complemental strand, 8689 - 8435
Alignment:
| Q |
55 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
154 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||| |||||||||||||||| | |||||| | |||| ||||| ||||||||| ||||| ||||||| |
|
|
| T |
8689 |
gcaaccatgttcataactggcattaatacactcatcgttgaagtattcatcatggttttgctcttttgttgttgattaacacttgaggtgtagacttgag |
8590 |
T |
|
| Q |
155 |
gttgcatgt------tagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg |
248 |
Q |
| |
|
||||||| | ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||| || |
|
|
| T |
8589 |
actgcatgtgcatgttttgatttacactaggagtttgaaccatagtactcacaatggtgttcttgttttgttgaacacttctagggttgatttgacgttg |
8490 |
T |
|
| Q |
249 |
catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctca |
303 |
Q |
| |
|
|||| ||| ||| ||| ||||||| ||||||||||| || |||||||| ||||| |
|
|
| T |
8489 |
catgctttaattaacaccgtgatttagaatcatagtattcatgttgttcttctca |
8435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 2589607 - 2589508
Alignment:
| Q |
18 |
catttgaggctgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctc |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| | || |||||| ||||||| | |||||||| |||| ||||||||||||||| || ||||| |
|
|
| T |
2589607 |
catttgaggttgcatgttttggttaaatccaggagtaggaatcatgttgctaactggcaaagaagtacttatcatggaagtattcatcatggtgctgctc |
2589508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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