View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_low_21 (Length: 303)
Name: NF14793_low_21
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 50 - 288
Target Start/End: Complemental strand, 8354317 - 8354079
Alignment:
| Q |
50 |
atactattggcaattaattaataaatcaaatacacatgggttacctgcaattgctctggattagtgctgattatgaaatcatcagctcccaaacgttcct |
149 |
Q |
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| T |
8354317 |
atactattggcaattaattaataaatcaaatacacatgggttacctgcaattggtctggattagtgctgattatgaaatcatcagctcccaaacgttcct |
8354218 |
T |
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| Q |
150 |
tagcctcagcttgtttggaaggagaagtacttatgacagtaacatggtgaccaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaacc |
249 |
Q |
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| T |
8354217 |
tagcctcagcttgtttggaaggagaagtacttatgacagtaacatggtgaccaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaacc |
8354118 |
T |
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| Q |
250 |
aacaacaccaattcttttccctgccgttgataccaaacc |
288 |
Q |
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| T |
8354117 |
aacaacaccaattcttttccctgccgttgataccaaacc |
8354079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 13389379 - 13389320
Alignment:
| Q |
199 |
accaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaaccaacaacacc |
258 |
Q |
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| T |
13389379 |
accaaatgctttggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacacc |
13389320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 13446919 - 13446975
Alignment:
| Q |
199 |
accaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaaccaacaac |
255 |
Q |
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| T |
13446919 |
accaaaagctttagcaaatttcacagccatatgaccaagtccaccaagaccaacaac |
13446975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 47601191 - 47601249
Alignment:
| Q |
200 |
ccaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaaccaacaacacc |
258 |
Q |
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||||| |||||| |||| || |||||||||||||||||||| || | |||||||||||| |
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| T |
47601191 |
ccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacc |
47601249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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