View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14793_low_23 (Length: 299)

Name: NF14793_low_23
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14793_low_23
NF14793_low_23
[»] chr8 (3 HSPs)
chr8 (219-287)||(5396374-5396442)
chr8 (15-74)||(5396587-5396646)
chr8 (124-181)||(5396480-5396537)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 5396442 - 5396374
Alignment:
Q  219 tcgtaggacccaattgctcctataattattaaactctaataagtagtaaccatttcattatattcttcg 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5396442 tcgtaggacccaattgctcctataattattaaactctaataagtagtaaccatttcattatattgttcg 5396374  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 5396646 - 5396587
Alignment:
Q  15 actatgaatgtcttcactcgtttggaaacaaacatatcaaacatctacctatctaactca 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5396646 actatgaatgtcttcactcgtttggaaacaaacatatcaaacatctacctatctaactca 5396587  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 5396537 - 5396480
Alignment:
Q  124 tattaccatatccacatcccatccttccaaaccataataatacactcactcatatgtt 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5396537 tattaccatatccacatcccatccttccaaaccataataatacactcactcatatgtt 5396480  T

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