View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_low_26 (Length: 285)
Name: NF14793_low_26
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 4247467 - 4247734
Alignment:
| Q |
1 |
tgccagtttttggtcgagcatctgtgtttcgctcgctctttcaatgatttgatgccatattccttggatgttttcattcatacctatttttccttttcag |
100 |
Q |
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| T |
4247467 |
tgccagtttttggtcgagcatctgtgtttcgc----tctttcaatgatttgatgccatattccttggatgttttcattcatacctatttttccttttcag |
4247562 |
T |
|
| Q |
101 |
tccttatatccattcggaggcgtcagtttcagcaagtaaaagaaaccattcctataattcttaatgtattgaaggctgtatctttgaagtcagacgaaga |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247563 |
tccttatatccatccggaggcgtcagtttcagcaagtaaaagaaaccattcctataattcttaatgtattgaaggctgtatctttgaagtcagacgaaga |
4247662 |
T |
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| Q |
201 |
actcgataatgtctttgaccgagctgttgagattgcaaattctatatatgaagtttgcgataagttggtggt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247663 |
actcgataatgtctttgaccgagctgttgagattgcaaattctatatatgaagtttgcgataagttggtggt |
4247734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 38 - 272
Target Start/End: Complemental strand, 2402573 - 2402338
Alignment:
| Q |
38 |
ctttcaatgatttgatgccatattccttggatgttttcattcatacctat-ttttccttttcagtccttatatccattcggaggcgtcagtttcagcaag |
136 |
Q |
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|||||||||| |||| |||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||| || | | || |||||||||| |||||| |
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| T |
2402573 |
ctttcaatgagttgacgccacattccttggatgttttcatacatacctattttttcattttcagtccttatctctacccagatgcgtcagtttgagcaag |
2402474 |
T |
|
| Q |
137 |
taaaagaaaccattcctataattcttaatgtattgaaggctgtatctttgaagtcagacgaagaactcgataatgtctttgaccgagctgttgagattgc |
236 |
Q |
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||| || | ||||| ||||||||| |||||||| |||| |||| || |||| ||| | | ||| ||||||||||| || ||||||||||| | |
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| T |
2402473 |
taagagcagttgttccttcgattcttaattcattgaaggttgtacatttggagacagataaagcaattgatgatgtctttgacagaactgttgagatttc |
2402374 |
T |
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| Q |
237 |
aaattctatatatgaagtttgcgataagttggtggt |
272 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
2402373 |
aaattctatatatgaagtttgcagtaagttggtggt |
2402338 |
T |
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