View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14793_low_27 (Length: 281)
Name: NF14793_low_27
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 38300070 - 38299824
Alignment:
| Q |
16 |
ataacaacccattatgcaaaacaagttgattttgaaatttttcttgcaaaattttattcttaaatgaatcttctaaagtgagagagaaaatcttttcctc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300070 |
ataacaacccattatgcaaaacaagttgattttgaaatttttcttgcaaaattttattcttaaatgaatcttctaaagtgagagagaaaatcttttcctc |
38299971 |
T |
|
| Q |
116 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38299970 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaa |
38299871 |
T |
|
| Q |
216 |
tccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38299870 |
tccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagt |
38299824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 56 - 262
Target Start/End: Complemental strand, 38305949 - 38305743
Alignment:
| Q |
56 |
ttcttgcaaaattttattcttaaatgaatcttctaaagtgagagagaaaatcttttcctctattccccaatcattcaagaactcaaccattctctcacac |
155 |
Q |
| |
|
|||||||||||| || | ||||||||| || |||||| |||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
38305949 |
ttcttgcaaaatgttgtccttaaatgagtcctctaaattgagagagaaaatctttttctctattccccaatcactcaaaaactcaaccattctctcacac |
38305850 |
T |
|
| Q |
156 |
atctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtct |
255 |
Q |
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||||| | ||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
38305849 |
atctcggctacagtgggtaaaacaacacagaagttgagaaccttactatttaacttccaatccgcgtcaacaaaatgcgcagtcaaacagatataagtct |
38305750 |
T |
|
| Q |
256 |
cagcagt |
262 |
Q |
| |
|
||||||| |
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|
| T |
38305749 |
cagcagt |
38305743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 38313311 - 38313058
Alignment:
| Q |
16 |
ataacaacccattatgcaaaacaagttgattttgaaatttttcttgcaaaattttattcttaaatgaatcttctaaagtgagagagaaaatcttttcctc |
115 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |||| |||||||||||| | ||||| | ||||||| ||||||||||||||||||||||||| ||| |
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|
| T |
38313311 |
ataacaacccattttgcaaacaaagttgattttttaattgttcttgcaaaatgtcattctcagatgaatcatctaaagtgagagagaaaatctttttctc |
38313212 |
T |
|
| Q |
116 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagt----gggtaaaacaagacagaaattaagaaccttactatttaactt |
211 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| | |||| |||| ||||||||||||| || ||||| |||||||||||||| |
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|
| T |
38313211 |
tattccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtaggagggt-aaacaagacagaagttgagaactttactatttaactt |
38313113 |
T |
|
| Q |
212 |
ccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtatta |
266 |
Q |
| |
|
||||| ||| ||||| |||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
38313112 |
ccaattcgcatcaacgaaatgagcagtcaaacaaatataagtctcagtagtatta |
38313058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 38320815 - 38320575
Alignment:
| Q |
16 |
ataacaacccattatgcaaaacaagttgattttgaaatttttcttgcaaaattttattcttaaatgaatcttctaaagtgagagagaaaatcttttcctc |
115 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||| ||| |||||||||||| | ||||| | ||||||| ||||||||||||||||| ||||||| ||| |
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|
| T |
38320815 |
ataacaacccattttgcaaaccaagttgagttttcaatagttcttgcaaaatgtcattctcagatgaatcatctaaagtgagagagaagatctttttctc |
38320716 |
T |
|
| Q |
116 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaa |
215 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| | ||||||| |||| |||||| | ||||||||||| ||||| |||||| |
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|
| T |
38320715 |
tattccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaa |
38320616 |
T |
|
| Q |
216 |
tccgcgtcaacaaaatgagcggtcaaacagatataagtctc |
256 |
Q |
| |
|
| ||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
38320615 |
ttcgcgtcagcaaaatgagcggtcaaacaaatataagtctc |
38320575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 38316720 - 38316475
Alignment:
| Q |
16 |
ataacaacccattatgcaaaacaagttgattttgaaatttttcttgcaaaattttattcttaaatgaatcttctaaagtgagagagaaaatcttttcctc |
115 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||| |||| ||| || ||||||| ||||||||| ||||||||||||||||||||||||| ||| |
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|
| T |
38316720 |
ataacaacccatttcgcaaacaaagttgatttttcaattgttctagcataacattattctcaaatgaatcatctaaagtgagagagaaaatctttttctc |
38316621 |
T |
|
| Q |
116 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagataca----gtgggtaaaacaagacagaaattaagaaccttactatttaactt |
211 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||| | ||||| | | || | |||| ||||||||| || || |||||||||||||| ||||| |
|
|
| T |
38316620 |
tattccccaatcattcaacaattcaatcattctctccgaaatctccgctgcaataggagggt-aaacaagacgaaagttgagaaccttactattcaactt |
38316522 |
T |
|
| Q |
212 |
ccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcag |
258 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
38316521 |
ccaattcgcgtcaacaaaatgagctgtcaaacaaatataagtctcag |
38316475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 38325563 - 38325338
Alignment:
| Q |
18 |
aacaacccattatgcaaaacaagttgattttgaaatttttcttgcaaaattttattcttaaatgaatcttctaaagtgagagagaaaatcttttcctcta |
117 |
Q |
| |
|
||||||||||| |||||| |||| ||| || |||| |||||| | || ||||||| | |||||| |||||||| ||||| |||||||||| ||||| |
|
|
| T |
38325563 |
aacaacccattttgcaaaccaagatgagatttcaattgttcttgtagaacattattctcgactgaatcatctaaagtaagagaaaaaatctttttctcta |
38325464 |
T |
|
| Q |
118 |
ttccccaatcattcaagaactcaaccattctctcacacatctcagatacagtg---ggtaaaacaagacagaaattaagaaccttactatttaacttcca |
214 |
Q |
| |
|
|||||||||||||||| || |||| |||||| |||||||||||| ||||| || | ||| ||||||||| |||||||||||||||| |||||| |
|
|
| T |
38325463 |
ttccccaatcattcaacaattcaatcattctttcacacatctcaccaccagtgtcagggtagacactacagaaattgagaaccttactatttaccttcca |
38325364 |
T |
|
| Q |
215 |
atccgcgtcaacaaaatgagcggtca |
240 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
38325363 |
attcgcgtcaacaaaatgagcggtca |
38325338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 38308717 - 38308485
Alignment:
| Q |
16 |
ataacaacccattatgcaaaacaagttgattttgaaatttttcttgcaaaattttattcttaaatgaatcttctaaagtgagagagaaaatcttttcctc |
115 |
Q |
| |
|
||||||||||||| | |||| |||||||| | | |||| || ||||| || ||||||| ||||||||| |||||||| | || |||||||||| ||| |
|
|
| T |
38308717 |
ataacaacccattttccaaaccaagttgagtcttcaattgttgttgcagaacattattctcaaatgaatcatctaaagtaaatgaaaaaatctttttctc |
38308618 |
T |
|
| Q |
116 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagtgggt---aaaacaagacagaaattaagaaccttactatttaacttc |
212 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||| | | | |||| || ||||||||||||||||| | || |||||||||||||||| |
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|
| T |
38308617 |
tactccccaatcattcaa--------ccattctctcacacatataggctccagtaggagggaaaacaagacagaaattgaaaagcttactatttaacttc |
38308526 |
T |
|
| Q |
213 |
caatccgcgtcaacaaaatgagcggtcaaacagatataagt |
253 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
38308525 |
caatccgcgccaacaaaatgagcggataaacaaatataagt |
38308485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 38850625 - 38850870
Alignment:
| Q |
16 |
ataacaacccattatgcaaaacaagttgattttgaaatttttcttgcaaaattttattcttaaatgaatcttctaaagtgagagagaaaatcttttcctc |
115 |
Q |
| |
|
||||||| ||||| ||||||||||||||| ||| |||| |||||||||||| | ||||| | ||||||| || | |||||||||||||||||||| ||| |
|
|
| T |
38850625 |
ataacaaaccattttgcaaaacaagttgagttttcaattgttcttgcaaaatctcattctcagatgaatcatcaatagtgagagagaaaatctttttctc |
38850724 |
T |
|
| Q |
116 |
tattccccaatcattcaagaactcaaccattctctcacacatct---cagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttc |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||| || || || ||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
38850725 |
tattccccaatcattcaacaactcaaccattctctcacaaatctccccactagtaggaggataaacaagacggaaattgataaccttactatttaacttc |
38850824 |
T |
|
| Q |
213 |
caatccgcgtcaacaaaatgagcggtcaaacagatataagtctcag |
258 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
38850825 |
caattcgcgtcaacaaaatgagcagtcaaacaaatataagtctcag |
38850870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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