View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_low_28 (Length: 269)
Name: NF14793_low_28
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42154918 - 42155161
Alignment:
| Q |
1 |
tgatgatagtcaattctataagtgttcataagggcttcctctagtgataatgttggattgttgaactcatcaatacctaaaaattaagttttcaaaaaag |
100 |
Q |
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| T |
42154918 |
tgataatagtcaattctataagtgtccataagggcttcctctagtgataacgttggatcgttgaactcatcaatacctaaaaattaagttttcaaaaaag |
42155017 |
T |
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| Q |
101 |
attgtgataagatatatgctagataaaaatattaaactaaaattttgacataaacatcaatttttttccnnnnnnnnnnncttatatgtattctatctca |
200 |
Q |
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| T |
42155018 |
attgtgataagatatatgctagataaaaatattaaactaaaattttgacataaacatcaaatttttttccaaaaaaaaaact--tatgtattctatctca |
42155115 |
T |
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| Q |
201 |
catttacattgtataataacattcaggaataaacaatatgaagtaa |
246 |
Q |
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| T |
42155116 |
catttacattgtataataacattcaggaataaacaatacgaagtaa |
42155161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 42165062 - 42165316
Alignment:
| Q |
1 |
tgatgatagtcaattctataagtgttcataagggcttcctctagtgataatgttggattgttgaactcatcaatacctaaaaattaagttttcaaaaaag |
100 |
Q |
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| T |
42165062 |
tgataatagtcaattctataagtgtccataagagcttcctctagtgataatgttggatcattgaactcatcaatacctaaaaattaagttttcaaaaaag |
42165161 |
T |
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| Q |
101 |
attgtgataagatatatg-----ctagataaaaatattaaactaaaattttgacataaacatcaatttttttccnnnnnnnnnnncttatatgtattcta |
195 |
Q |
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| T |
42165162 |
attgtgatcagatatatgctagactagataaaaatatcaaaccaaaatttagacataaacataaactttttcc----gcaaaaatct--tatgtactcta |
42165255 |
T |
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| Q |
196 |
tct--cacatttacattgtataataacattcaggaataaacaatatgaagtaaagtgtgtt |
254 |
Q |
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| T |
42165256 |
tctcacacatttacattatataataacattaaggaataaacaacatgaagtaaagtgtgtt |
42165316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 42292326 - 42292086
Alignment:
| Q |
10 |
tcaattctataagtgttcataagggcttcctctagtgataatgttggattgttgaactcatcaatacctaaaaattaagttttcaaaaaagattgtgata |
109 |
Q |
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| T |
42292326 |
tcaattctagaagtgtccataagggcttcctcgagtgatagtgttggatcattaaactcatcaacacctaaaaattaagttttcaaaaaagattatgatc |
42292227 |
T |
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| Q |
110 |
agatatatgctagataaaaatattaaa--ctaaaattttgacataaacatcaatttttttccnnnnnnnnnnncttatatgtattctatctcacatttac |
207 |
Q |
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| T |
42292226 |
atatatatgttagataaaaatatcaaaagataaaattcatacataaacgtaaatttttatc-------gaaaaatgttatgtattctatctcacatttac |
42292134 |
T |
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| Q |
208 |
attgtataataacattcaggaataaacaatatgaagtaaagtgtgttt |
255 |
Q |
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| T |
42292133 |
tttatataacaatattcaggaataaacaatatgaagtaaagtgtgttt |
42292086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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