View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14793_low_29 (Length: 267)
Name: NF14793_low_29
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 14367098 - 14366860
Alignment:
| Q |
15 |
caaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaaa---------------caaaacaaaatttc-a |
98 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |
|
|
| T |
14367098 |
caaaggcaactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaaatacgagtttggttcacaaaacaaaaattcca |
14366999 |
T |
|
| Q |
99 |
gtatgaggtataccacgtcataaaaaggaaataatgacaatctacta------------------ctgaactgccgaaacgataaagttatgaagttata |
180 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
14366998 |
gtatgaggtataccacgtcataaaaagggaaaagtgacaatctactaaatttagcaataagtatactgaaccgccgaaacgataaagttatgaagttata |
14366899 |
T |
|
| Q |
181 |
aaatcttataagtatagtcttccatggacatctagtaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14366898 |
aaatcttataagtatagtcttccatggaaatctagtaaa |
14366860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 26382878 - 26382784
Alignment:
| Q |
155 |
cgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatctagtaaacaattttgtcttgattctcaagcgattagt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26382878 |
cgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatctagtaaacaattttgtcttgattctcaaacgattagt |
26382784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 19576447 - 19576686
Alignment:
| Q |
15 |
caaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaaa----------------caaaacaaaatttc- |
97 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |
|
|
| T |
19576447 |
caaaggcaactgaagcatcttaaattgctaaatattgaagtaaataaacaaatccttaaattaacccaaatacgagtttggttcacaaaacaaaaattcg |
19576546 |
T |
|
| Q |
98 |
agtatgaggtataccacgtcataaaaaggaaataatgacaatctacta------------------ctgaactgccgaaacgataaagttatgaagttat |
179 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
19576547 |
agtatgaggtataccacgccataaaaaggaaaaaatgacaatctactaaatttagcaataagtatactgaaccgccgaaacgataaagttatgaagttat |
19576646 |
T |
|
| Q |
180 |
aaaatcttataagtatagtcttccatggacatctagtaaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19576647 |
aaaatcttataagtatagtcttccatggaaatctagtaaa |
19576686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 8856061 - 8856208
Alignment:
| Q |
15 |
caaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaa-----------------acaaaacaaaatttc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |
|
|
| T |
8856061 |
caaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaatcaaaaatactagtttggttcacaaaacaaagttct |
8856160 |
T |
|
| Q |
98 |
agtatgaggtataccacgtcataaaaaggaaataatgacaatctacta |
145 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8856161 |
agtatgaggtataccacggcataaaaaggaaataatgacaatctacta |
8856208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 8856293 - 8856368
Alignment:
| Q |
144 |
tactgaactgccgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatctagtaaa |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8856293 |
tactgaaccgccgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatctagtaaa |
8856368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 8856225 - 8856259
Alignment:
| Q |
144 |
tactgaactgccgaaacgataaagttatgaagtta |
178 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
8856225 |
tactgaaccgccgaaacgataaagttatgaagtta |
8856259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University