View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14793_low_3 (Length: 529)

Name: NF14793_low_3
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14793_low_3
NF14793_low_3
[»] chr2 (7 HSPs)
chr2 (129-515)||(41830631-41831017)
chr2 (15-124)||(41317265-41317376)
chr2 (16-124)||(4969426-4969537)
chr2 (25-124)||(36193618-36193717)
chr2 (4-79)||(40210005-40210082)
chr2 (82-124)||(41317213-41317255)
chr2 (4-124)||(15260364-15260484)
[»] chr1 (25 HSPs)
chr1 (2-122)||(27260603-27260725)
chr1 (16-124)||(5466227-5466337)
chr1 (4-124)||(38289631-38289743)
chr1 (4-124)||(38762208-38762330)
chr1 (43-124)||(48872716-48872797)
chr1 (25-120)||(36775185-36775280)
chr1 (5-124)||(29936800-29936921)
chr1 (43-124)||(35414468-35414549)
chr1 (43-124)||(46859528-46859609)
chr1 (25-92)||(46039982-46040050)
chr1 (19-117)||(42824525-42824623)
chr1 (89-124)||(27260739-27260774)
chr1 (58-124)||(4604724-4604790)
chr1 (82-132)||(38289571-38289621)
chr1 (288-354)||(38720042-38720108)
chr1 (82-124)||(48872591-48872633)
chr1 (4-53)||(25302609-25302658)
chr1 (43-124)||(49660065-49660146)
chr1 (291-359)||(37963057-37963125)
chr1 (298-360)||(51044672-51044734)
chr1 (25-78)||(49804874-49804927)
chr1 (10-79)||(702424-702495)
chr1 (13-50)||(8905793-8905832)
chr1 (25-53)||(11121560-11121588)
chr1 (302-346)||(16127080-16127124)
[»] chr4 (13 HSPs)
chr4 (2-124)||(33085216-33085338)
chr4 (38-124)||(25467887-25467973)
chr4 (4-122)||(50645486-50645602)
chr4 (290-388)||(24358388-24358486)
chr4 (8-138)||(23719399-23719531)
chr4 (4-124)||(54342839-54342961)
chr4 (71-124)||(54128172-54128225)
chr4 (4-92)||(51734556-51734647)
chr4 (298-358)||(43560213-43560273)
chr4 (89-124)||(50645434-50645469)
chr4 (82-124)||(4272460-4272502)
chr4 (16-79)||(7146069-7146134)
chr4 (24-92)||(54909402-54909471)
[»] chr5 (11 HSPs)
chr5 (2-124)||(16967370-16967494)
chr5 (2-124)||(29499669-29499793)
chr5 (4-129)||(16594266-16594390)
chr5 (47-130)||(21575631-21575714)
chr5 (16-79)||(5899824-5899889)
chr5 (25-124)||(5899779-5899878)
chr5 (90-124)||(16967509-16967543)
chr5 (58-124)||(26009134-26009199)
chr5 (75-124)||(13739566-13739615)
chr5 (25-73)||(25255331-25255379)
chr5 (25-73)||(25319121-25319169)
[»] chr6 (8 HSPs)
chr6 (4-124)||(28982533-28982655)
chr6 (25-124)||(34383750-34383849)
chr6 (18-124)||(354345-354450)
chr6 (25-124)||(5456742-5456841)
chr6 (16-107)||(2204312-2204405)
chr6 (49-124)||(10729675-10729750)
chr6 (4-68)||(23632585-23632651)
chr6 (4-53)||(11742948-11742997)
[»] chr7 (10 HSPs)
chr7 (16-124)||(2819322-2819432)
chr7 (13-124)||(11778644-11778757)
chr7 (13-124)||(12651214-12651327)
chr7 (13-124)||(17117050-17117162)
chr7 (43-124)||(19223544-19223625)
chr7 (16-80)||(48814742-48814808)
chr7 (75-125)||(44255788-44255838)
chr7 (21-53)||(13437271-13437303)
chr7 (25-53)||(29763909-29763937)
chr7 (21-53)||(48639349-48639381)
[»] scaffold0481 (1 HSPs)
scaffold0481 (16-124)||(1093-1203)
[»] chr3 (23 HSPs)
chr3 (4-124)||(31350498-31350620)
chr3 (25-124)||(49875874-49875972)
chr3 (27-124)||(33976286-33976383)
chr3 (25-124)||(50886272-50886369)
chr3 (4-124)||(50886450-50886573)
chr3 (4-124)||(31425589-31425709)
chr3 (4-124)||(15927487-15927609)
chr3 (2-122)||(46114255-46114377)
chr3 (25-124)||(47479060-47479159)
chr3 (13-79)||(40367674-40367742)
chr3 (25-124)||(4617758-4617855)
chr3 (4-124)||(43898622-43898742)
chr3 (37-124)||(34608191-34608278)
chr3 (43-124)||(37143201-37143280)
chr3 (43-124)||(31930927-31931008)
chr3 (19-78)||(38017859-38017918)
chr3 (70-124)||(31664732-31664786)
chr3 (4-68)||(19961989-19962055)
chr3 (89-124)||(35987055-35987090)
chr3 (4-79)||(33389065-33389141)
chr3 (298-360)||(34626446-34626508)
chr3 (43-79)||(38910537-38910573)
chr3 (36-124)||(41610406-41610494)
[»] chr8 (13 HSPs)
chr8 (4-129)||(12171977-12172105)
chr8 (4-129)||(12416405-12416533)
chr8 (25-124)||(7612101-7612200)
chr8 (43-124)||(12946520-12946601)
chr8 (43-117)||(40649562-40649636)
chr8 (315-372)||(5948210-5948267)
chr8 (82-124)||(12946678-12946720)
chr8 (19-124)||(9306391-9306493)
chr8 (4-55)||(21514900-21514953)
chr8 (16-79)||(31266171-31266236)
chr8 (27-125)||(37792054-37792151)
chr8 (4-130)||(36023145-36023267)
chr8 (11-124)||(44712490-44712605)
[»] scaffold0295 (1 HSPs)
scaffold0295 (38-122)||(6038-6122)


Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 129 - 515
Target Start/End: Complemental strand, 41831017 - 41830631
Alignment:
Q  129 ttaactaaataagctaacaaaaggacttggagttaaatacactccatatctgaaggttttttattagcttacatgcaaagtattannnnnnnatgtttca 228  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  41831017 ttaactaaataagctaacaaaaggacttggagttaaagacactccatatctgaaggttttttattagcttacatgcaaagtattcttttgttatgtttca 41830918  T
Q  229 aattaattaagttcttctataatatgcattgacctgacatttgaatacatttgactttttgaagatggtctcaaatagcagcacgattaccgggaagaac 328  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830917 aattaattaacttcttctataatatgcattgacctgacatttgaatacatttgactttttgaagatggtctcaaatagcagcacgattaccgggaagaac 41830818  T
Q  329 tgacaatgaaataaaaaacttttggaattcaactataaagaaaagacttaagaacttgtcttcttcaacctcaccaaatccaagtgatgagtcctcacct 428  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830817 cgacaatgaaataaaaaacttttggaattcaactataaagaaaagacttaagaacttgtcttcttcaacctcaccaaatccaagtgatgagtcctcacct 41830718  T
Q  429 gaacctaacaaagatttcaatatacaacaagggtcctatatttctatacaacatgcaaattacaacaactacatgagtatgcctatg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41830717 gaacctaacaaagatttcaatatacaacaagggtcctatatttctatacaacatgcaaattacaacagctacatgagtatgcctatg 41830631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 41317265 - 41317376
Alignment:
Q  15 atacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgt 112  Q
    |||||||||||||  |||||||||||||| |||||||||| ||  | |||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  41317265 atacttttattcttgctcttcctttttctctctctattgtcattgttcaataagaatagagaaaaaagattgtcccaaaaagttgttgaaaattggatgt 41317364  T
Q  113 caaaatatcatt 124  Q
    ||||||||||||    
T  41317365 caaaatatcatt 41317376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 4969537 - 4969426
Alignment:
Q  16 tacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaaga-ttgtccctaaaagttgttgaaaattggatgt 112  Q
    ||||||||||||  |||||| ||||||| |||||||||||||  ||||||||||||| |||||||| | |||||    |||||||||  |||||||||||    
T  4969537 tacttttattctctctcttcttttttctctctctattgttattgtccaataagaataaaggaaaaaaagttgtcatccaaagttgtttgaaattggatgt 4969438  T
Q  113 caaaatatcatt 124  Q
    ||||||||||||    
T  4969437 caaaatatcatt 4969426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 36193717 - 36193618
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||||| ||||||| ||||||||| |||  |||||||||||| ||||||||||||| |     ||||||||  |||||||| |||||||||||||||    
T  36193717 tctctcttcatttttctctctctattgctattgtccaataagaatggaggaaaaagattataatccaaagttgtctaaaattggttgtcaaaatatcatt 36193618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 40210082 - 40210005
Alignment:
Q  4 atactctcgttatacttttattctct--cttcctttttctttctctattgttatcatccaataagaatagaggaaaaa 79  Q
    |||||| | |||||||||||||||||  ||| |||||||| |||||||||||||  ||||||||||| ||||||||||    
T  40210082 atactcacattatacttttattctctttctttctttttctctctctattgttattgtccaataagaagagaggaaaaa 40210005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 41317255 - 41317213
Alignment:
Q  82 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  41317255 ttgtccctaaaaattgttgaaaatttgatgtcaaaatatcatt 41317213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 15260364 - 15260484
Alignment:
Q  4 atactctcgttatacttttatt--ctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttga 101  Q
    |||| ||| |||||||||||||  |||||||||||| |||  ||||||| ||||  |||||||| ||   || ||||||||| ||||||||| || || |    
T  15260364 atacactcattatacttttattttctctcttcctttctct--ctctattattattgtccaataaaaaggaagaaaaaagattatccctaaaaattattta 15260461  T
Q  102 aaattggatgtcaaaatatcatt 124  Q
    ||||||| ||| |||||||||||    
T  15260462 aaattggttgttaaaatatcatt 15260484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 27260725 - 27260603
Alignment:
Q  2 ttatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgtt 99  Q
    |||||||||| |||||||||||||||||||  |||||||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||    
T  27260725 ttatactctcattatacttttattctctctcttcctttttctctctctattgttatcatccaataagaacagaggaaaaatattgtctctaaaaattgtt 27260626  T
Q  100 gaaaattggatgtcaaaatatca 122  Q
    |||||||||||||||||||||||    
T  27260625 gaaaattggatgtcaaaatatca 27260603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 5466337 - 5466227
Alignment:
Q  16 tacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtc 113  Q
    ||||||||||||  ||||||||||||||||||||||||||||  |||||||||||  |||||||||| ||||| |  ||||||||| |||||||| ||||    
T  5466337 tacttttattctctctcttcctttttctttctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtc 5466238  T
Q  114 aaaatatcatt 124  Q
    |||||||||||    
T  5466237 aaaatatcatt 5466227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 38289631 - 38289743
Alignment:
Q  4 atactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaa 103  Q
    |||||||| |||||||||||||||||||        || |||||||||||||  |||||||||||||||| |||||  ||||| ||||||||||||||||    
T  38289631 atactctcattatacttttattctctct--------ctatctctattgttattgtccaataagaatagagaaaaaaagttgtctctaaaagttgttgaaa 38289722  T
Q  104 attggatgtcaaaatatcatt 124  Q
    ||| |||||||||||||||||    
T  38289723 atttgatgtcaaaatatcatt 38289743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 38762330 - 38762208
Alignment:
Q  4 atactctcgttatacttttatt--ctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttga 101  Q
    |||| ||| |||||||||||||  |||||||| ||||||| |||||||| ||||  | |||||||||   || |||||| |||||||||||||||||| |    
T  38762330 atacactcattatacttttattatctctcttcatttttctctctctattattattgttcaataagaaggaagaaaaaaggttgtccctaaaagttgttta 38762231  T
Q  102 aaattggatgtcaaaatatcatt 124  Q
    ||||||| |||||||||||||||    
T  38762230 aaattggttgtcaaaatatcatt 38762208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 48872716 - 48872797
Alignment:
Q  43 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||| ||  ||||||||||||||||||||||| ||||||| | ||||| |||||||||||||||||| ||||||||    
T  48872716 tctctattgtcattgtccaataagaatagaggaaaaaggttgtcccaacaagttattgaaaattggatgtcaatatatcatt 48872797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 36775185 - 36775280
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatat 120  Q
    ||||||||||||||||| | |||||||||||  |||||||| || |||| |||||| ||||| |  |||||||||| ||||||| |||||||||||    
T  36775185 tctctcttcctttttctctttctattgttattgtccaataaaaaaagagaaaaaaggttgtcacccaaagttgttggaaattggttgtcaaaatat 36775280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 29936800 - 29936921
Alignment:
Q  5 tactctcgttatacttttattc--tctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaa 102  Q
    ||||||| || |||||||||||  ||||||| ||||||| || |||||||||| || |||||||||| |||||||||  ||||  |  ||||||||| ||    
T  29936800 tactctcattgtacttttattcgctctcttcttttttctctcactattgttattattcaataagaatggaggaaaaaagttgttacccaaagttgtttaa 29936899  T
Q  103 aattggatgtcaaaatatcatt 124  Q
    |||||| ||| |||||||||||    
T  29936900 aattggttgttaaaatatcatt 29936921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 35414549 - 35414468
Alignment:
Q  43 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||||  ||||||||||||||||||||||  |||||    |||||| || ||||||||||||||||||||||||    
T  35414549 tctctattgttattgtccaataagaatagaggaaaaaagttgtcatccaaagttatttaaaattggatgtcaaaatatcatt 35414468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 46859528 - 46859609
Alignment:
Q  43 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||||  || ||||| || |||||||||||| |||| ||||||||||||| ||||||| |||| ||||||||||    
T  46859528 tctctattgttattgtctaataaaaagagaggaaaaagactgtcactaaaagttgttggaaattggttgtctaaatatcatt 46859609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 46039982 - 46040050
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagagg-aaaaagattgtccctaaa 92  Q
    |||||||| |||||||||||||||||||||| ||| |||||||| ||||| |||||||||||| |||||    
T  46039982 tctctctttctttttctttctctattgttattatctaataagaagagaggaaaaaagattgtcactaaa 46040050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 42824525 - 42824623
Alignment:
Q  19 ttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaa 117  Q
    |||| |||||||||||| ||||| ||||||||| ||| |||||||||||| |||| |||||  ||||| |  ||||||||| |||||||  ||||||||    
T  42824525 tttttttctctcttcctatttctctctctattgatattatccaataagaaaagagaaaaaaagttgtcacataaagttgtttaaaattgtttgtcaaaa 42824623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 27260739 - 27260774
Alignment:
Q  89 taaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  27260739 taaaagttgttgaaaattggatgtcaaaatatcatt 27260774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 4604724 - 4604790
Alignment:
Q  58 tccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||||||||  || |||||  ||||||||||||||||||  ||||||| |||||||||||||||    
T  4604724 tccaataagaatgaagaaaaaaagttgtccctaaaagttgttttaaattggttgtcaaaatatcatt 4604790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 38289621 - 38289571
Alignment:
Q  82 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatttttcttaa 132  Q
    |||||| |||||| ||||||||||||||||| |||||||||||| ||||||    
T  38289621 ttgtccttaaaagctgttgaaaattggatgttaaaatatcatttctcttaa 38289571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 38720042 - 38720108
Alignment:
Q  288 tgaagatggtctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttgga 354  Q
    ||||| |||||| ||||||| | || ||||||||||||||| |||||||||||||| |||| |||||    
T  38720042 tgaaggtggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattgga 38720108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 48872633 - 48872591
Alignment:
Q  82 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  48872633 ttgtctctataagttgttgaaaattggatgtcaaaatatcatt 48872591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 25302658 - 25302609
Alignment:
Q  4 atactctcgttatacttttattctctcttcctttttctttctctattgtt 53  Q
    |||||| | ||||||| ||||||||||||||||||||| |||||||||||    
T  25302658 atactcacattatactcttattctctcttcctttttctctctctattgtt 25302609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 49660065 - 49660146
Alignment:
Q  43 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||| ||  || |||||||||||||||||||  ||||| |  |||||||||   ||||||||||||||||||||||    
T  49660065 tctctattgtaattgtctaataagaatagaggaaaaaagttgtcacccaaagttgtttggaattggatgtcaaaatatcatt 49660146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 37963057 - 37963125
Alignment:
Q  291 agatggtctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattca 359  Q
    ||||||||||| || ||||||| |||||| ||||||||||||||||| || |||||  | |||||||||    
T  37963057 agatggtctcagattgcagcacaattaccaggaagaactgacaatgagattaaaaatctatggaattca 37963125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 51044672 - 51044734
Alignment:
Q  298 ctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattcaa 360  Q
    ||||||| ||| ||| |||||| || ||||| || ||||| ||||||||||||||||||||||    
T  51044672 ctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaa 51044734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 49804927 - 49804874
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaa 78  Q
    ||||||||| | ||||||||||||||||| | ||||||||| || |||||||||    
T  49804927 tctctcttcttctttctttctctattgtttttatccaataaaaagagaggaaaa 49804874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 702495 - 702424
Alignment:
Q  10 tcgttatacttttattctctcttc--ctttttctttctctattgttatcatccaataagaatagaggaaaaa 79  Q
    |||||||| |||||||| ||||||  |||||||  |||||||||||||  |||||||||||  |||||||||    
T  702495 tcgttatatttttattccctcttcttctttttccctctctattgttattgtccaataagaaaggaggaaaaa 702424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 8905793 - 8905832
Alignment:
Q  13 ttatacttttatt--ctctcttcctttttctttctctatt 50  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  8905793 ttatacttttattttctctcttcctttttctttctctatt 8905832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 11121560 - 11121588
Alignment:
Q  25 tctctcttcctttttctttctctattgtt 53  Q
    |||||||||||||||||||||||||||||    
T  11121560 tctctcttcctttttctttctctattgtt 11121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 16127124 - 16127080
Alignment:
Q  302 aatagcagcacgattaccgggaagaactgacaatgaaataaaaaa 346  Q
    ||||||||||  |||||| |||||||| |||||||||||||||||    
T  16127124 aatagcagcaaaattacctggaagaacagacaatgaaataaaaaa 16127080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 33085216 - 33085338
Alignment:
Q  2 ttatactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttga 101  Q
    |||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||    
T  33085216 ttatactcttattatacttttattctcttttcctttttctctctctattgttatcatccaataaaaataaaggaaaaagattgtccataaaagttattga 33085315  T
Q  102 aaattggatgtcaaaatatcatt 124  Q
    |||||| || |||||||||||||    
T  33085316 aaattgaatatcaaaatatcatt 33085338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 25467887 - 25467973
Alignment:
Q  38 ttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||| ||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  25467887 ttctctctttattgttatcatccaataagaatagagaaaaaaaattatccctaaaagttgttgaaaattgcatgtcaaaatatcatt 25467973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 50645486 - 50645602
Alignment:
Q  4 atactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaa 103  Q
    |||||||| ||||||||||||  ||||||| |||||||  |||||||||||| ||||||||||||||||| |||||  ||||| ||||||||||||||||    
T  50645486 atactctcattatacttttata-tctcttcttttttct--ctctattgttattatccaataagaatagagaaaaaaagttgtctctaaaagttgttgaaa 50645582  T
Q  104 attggatg-tcaaaatatca 122  Q
    |||||||| |||||||||||    
T  50645583 attggatgttcaaaatatca 50645602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 290 - 388
Target Start/End: Complemental strand, 24358486 - 24358388
Alignment:
Q  290 aagatggtctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattcaactataaagaaaagacttaagaacttgtc 388  Q
    ||||||||||||||| || ||||| ||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| |||||| ||||    
T  24358486 aagatggtctcaaattgcggcacgcttacccggaagaacagacaatgaaatcaagaacttttggaattcaacaataaagaaaagactcaagaacatgtc 24358388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 23719531 - 23719399
Alignment:
Q  8 tctcgttatacttttatt--ctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaat 105  Q
    |||| |||||||||||||  |||||||||| ||| | |||||||||||||  || ||||||||  | |||||||| |||||  | |||||||||  ||||    
T  23719531 tctcattatacttttattttctctcttcctctttttctctctattgttattgtcgaataagaaaggcggaaaaaggttgtcattcaaagttgtttcaaat 23719432  T
Q  106 tggatgtcaaaatatcatttttcttaactaaat 138  Q
    ||| |||||||||||||||  ||||||||||||    
T  23719431 tggttgtcaaaatatcattcctcttaactaaat 23719399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 54342839 - 54342961
Alignment:
Q  4 atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttga 101  Q
    |||||||| |||||||||||||||||||  || ||||||| | | |||||||||  |||||||||||  |||||| ||| ||||| |  ||||||||| |    
T  54342839 atactctcattatacttttattctctctcttcttttttctctttgtattgttattgtccaataagaaaggaggaacaaggttgtcacccaaagttgttta 54342938  T
Q  102 aaattggatgtcaaaatatcatt 124  Q
    ||||||| |||||| ||||||||    
T  54342939 aaattggttgtcaagatatcatt 54342961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 54128172 - 54128225
Alignment:
Q  71 gaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||| ||||| |||||||||||| |||||||| |||||||||||||||    
T  54128172 gaggaaaaaggttgtcactaaaagttgtttaaaattggttgtcaaaatatcatt 54128225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 51734647 - 51734556
Alignment:
Q  4 atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagag-gaaaaagattgtccctaaa 92  Q
    |||||||| || ||||||||||||||||  | |||||||| |||||||||||||  ||||||||||| ||||  |||||||||||| |||||    
T  51734647 atactctcattgtacttttattctctctctttctttttctctctctattgttattgtccaataagaagagagaaaaaaagattgtcactaaa 51734556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 43560273 - 43560213
Alignment:
Q  298 ctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattc 358  Q
    ||||||||||||||| |||||| || ||||| || |||||||| |||||||| ||||||||    
T  43560273 ctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattc 43560213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 50645469 - 50645434
Alignment:
Q  89 taaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||||||||||||||| ||||||||||||||||    
T  50645469 taaaagttgttgaaaattgaatgtcaaaatatcatt 50645434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 4272502 - 4272460
Alignment:
Q  82 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||    
T  4272502 ttgtcactaaaagttgttggaaattggttgtcaaaatatcatt 4272460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 7146134 - 7146069
Alignment:
Q  16 tacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaa 79  Q
    ||||||||||||  ||||| |||||||| |||||||||||||  |||||||| || ||||||||||    
T  7146134 tacttttattctctctctttctttttctctctctattgttattgtccaataaaaagagaggaaaaa 7146069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 54909402 - 54909471
Alignment:
Q  24 ttctctcttcctttttctttctctattgttatcatccaataagaatagaggaa-aaagattgtccctaaa 92  Q
    ||||||||| |||||||| |||||||||||||  |||||| | || ||||||| |||| |||||||||||    
T  54909402 ttctctctttctttttctctctctattgttattgtccaatgaaaagagaggaataaaggttgtccctaaa 54909471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 16967494 - 16967370
Alignment:
Q  2 ttatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgtt 99  Q
    |||||||||| |||||||||||||||||||  | |||||  | |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  16967494 ttatactctcattatacttttattctctctctttcttttattctctctattgttatcatccaataagaatagaggaaaaatgttgtccctaaaagttgtt 16967395  T
Q  100 gaaaattggatgtcaaaatatcatt 124  Q
    ||||||| |||||||||||||||||    
T  16967394 gaaaattagatgtcaaaatatcatt 16967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 29499793 - 29499669
Alignment:
Q  2 ttatactctcgttatacttttattctct--cttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgtt 99  Q
    |||||||||| ||||||||||||| | |  |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  29499793 ttatactctcattatacttttattatttttcttcctttttctctctctattgttatcatccaataagaattgaggaaaaagattatccctaaaaattgtt 29499694  T
Q  100 gaaaattggatgtcaaaatatcatt 124  Q
     ||||||||||||||||||||||||    
T  29499693 aaaaattggatgtcaaaatatcatt 29499669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 16594390 - 16594266
Alignment:
Q  4 atactctcgttatacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttga 101  Q
    |||||||| ||||| |||||||||  |||||||||||||| |||||||||||||  |||||||| || |||||||| |  ||||| ||||||    |||     
T  16594390 atactctcattatatttttattctttctcttcctttttctctctctattgttattgtccaataaaaagagaggaaataagttgtcactaaaa---attgg 16594294  T
Q  102 aaattggatgtcaaaatatcatttttct 129  Q
    ||||||| ||||||||||||||| ||||    
T  16594293 aaattggttgtcaaaatatcattcttct 16594266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 21575714 - 21575631
Alignment:
Q  47 tattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatttttctt 130  Q
    |||||||||  |||| ||||||  |||||||||  ||||| ||||| |||||| |||||||| |||||||||||||||||||||    
T  21575714 tattgttattgtccattaagaacggaggaaaaatgttgtcactaaatgttgtttaaaattggttgtcaaaatatcatttttctt 21575631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 5899889 - 5899824
Alignment:
Q  16 tacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaa 79  Q
    ||||||||||||  ||||| |||||| ||||||||||||||| |||||||||||| ||||||||||    
T  5899889 tacttttattctctctctttctttttatttctctattgttattatccaataagaagagaggaaaaa 5899824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 5899878 - 5899779
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaa-gattgtccctaaaagttgttgaaaattggatgtcaaaatatcat 123  Q
    |||||||| |||||| ||||||||||||||| |||||||||||| |||||||||| | | ||| |||||| |||||  |  |||| ||||||||||||||    
T  5899878 tctctctttctttttatttctctattgttattatccaataagaagagaggaaaaaaggtagtcactaaaa-ttgtttgattttggttgtcaaaatatcat 5899780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 16967509 - 16967543
Alignment:
Q  90 aaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||||||||||||||||||||||||||    
T  16967509 aaaagttgttgaaaattggatgtcaaaatatcatt 16967543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 26009199 - 26009134
Alignment:
Q  58 tccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||||||| ||||||||| | ||||| |||||||||||| |||||||  |||||||||||||||    
T  26009199 tccaataagaaaagaggaaaagg-ttgtcactaaaagttgtttaaaattgattgtcaaaatatcatt 26009134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 13739566 - 13739615
Alignment:
Q  75 aaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||| |||||||||||||||||| ||| |||| |||||||||||||||    
T  13739566 aaaaaggttgtccctaaaagttgtttaaagttggttgtcaaaatatcatt 13739615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 25255331 - 25255379
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagag 73  Q
    ||||||||||||||||| ||||||||||| |   |||||||||||||||    
T  25255331 tctctcttcctttttctctctctattgttttggaccaataagaatagag 25255379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 25319121 - 25319169
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagag 73  Q
    ||||||||||||||||| ||||||||||| |   |||||||||||||||    
T  25319121 tctctcttcctttttctctctctattgttttggaccaataagaatagag 25319169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 28982655 - 28982533
Alignment:
Q  4 atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttga 101  Q
    |||||||| || ||||||||||||||||  |||||||||| || ||||| ||||  |||||||| || ||||||||||| ||||| ||||||||||||||    
T  28982655 atactctcattgtacttttattctctctcttcctttttctctccctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttga 28982556  T
Q  102 aaattggatgtcaaaatatcatt 124  Q
    ||||||| |||||||||||||||    
T  28982555 aaattggttgtcaaaatatcatt 28982533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 34383849 - 34383750
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||| ||||||||||| |||||||||||||  |||||||| || ||||||||| | ||||| ||||||||||||  |||||||||||||||||||||||    
T  34383849 tctcttttcctttttctctctctattgttattgtccaataaaaagagaggaaaagggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 34383750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 354345 - 354450
Alignment:
Q  18 cttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaa 117  Q
    ||||||||||||||   | ||||| |||||||||||||  |||||||| || |||||||||| ||| ||| |||||||||||| ||||||| ||||||||    
T  354345 cttttattctctctctttctttctctctctattgttattgtccaataa-aagagaggaaaaaaattatccttaaaagttgttggaaattggttgtcaaaa 354443  T
Q  118 tatcatt 124  Q
    |||||||    
T  354444 tatcatt 354450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 5456841 - 5456742
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||||| ||||||| |||||||||||||  |||||||| || || | |||||  || || ||||||||||||| ||||||| |||||||||||||||    
T  5456841 tctctcttcttttttctctctctattgttattgtccaataaaaagagcgaaaaaatgttatcactaaaagttgttggaaattggttgtcaaaatatcatt 5456742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 2204405 - 2204312
Alignment:
Q  16 tacttttattctc--tcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattg 107  Q
    |||||||||||||  ||||||||| ||| |||||||| ||||  |||||||| || ||||||||||| ||||| ||||||||||||| ||||||    
T  2204405 tacttttattctccctcttcctttctctctctctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttggaaattg 2204312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 10729675 - 10729750
Alignment:
Q  49 ttgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||  |||| ||| || ||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||    
T  10729675 ttgttattgtccagtaaaaagagaggaaaaaggttgtcactaaaagttgttggaaattggttgtcaaaatatcatt 10729750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 23632651 - 23632585
Alignment:
Q  4 atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaa 68  Q
    |||||||| || ||||||||||||||||  | |||||||| |||||||||||||  |||||||||||    
T  23632651 atactctcattgtacttttattctctctcttactttttctctctctattgttattgtccaataagaa 23632585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 11742997 - 11742948
Alignment:
Q  4 atactctcgttatacttttattctctcttcctttttctttctctattgtt 53  Q
    |||||| | ||||| ||||| ||||||||||||||||| |||||||||||    
T  11742997 atactcacattatatttttactctctcttcctttttctctctctattgtt 11742948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 2819322 - 2819432
Alignment:
Q  16 tacttttattctct--cttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtc 113  Q
    ||||||||||||||  |||| ||||||| |||||||||||||  |||||||| || ||||||||||| ||||| |||||| |||||||||||||| ||||    
T  2819322 tacttttattctctatcttcgtttttctgtctctattgttattgtccaataaaaagagaggaaaaaggttgtcactaaaaattgttgaaaattggttgtc 2819421  T
Q  114 aaaatatcatt 124  Q
    |||||||||||    
T  2819422 aaaatatcatt 2819432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 11778644 - 11778757
Alignment:
Q  13 ttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggat 110  Q
    |||||||||||||||||||  || ||||||| |||||||| ||||  |||||||||||   || ||||| ||||||||||||||||||| |||||||| |    
T  11778644 ttatacttttattctctctcttcatttttctctctctattattattgtccaataagaaggaagaaaaaaaattgtccctaaaagttgtttaaaattggtt 11778743  T
Q  111 gtcaaaatatcatt 124  Q
    ||||||||||||||    
T  11778744 gtcaaaatatcatt 11778757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 12651327 - 12651214
Alignment:
Q  13 ttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggat 110  Q
    |||||||||||||||||||  |  ||||||| |||||||||||||  |||||||  || ||||||||||  ||||| | ||||||||||| ||||||| |    
T  12651327 ttatacttttattctctctctttatttttctctctctattgttattgtccaatagaaaaagaggaaaaaagttgtcaccaaaagttgttggaaattggtt 12651228  T
Q  111 gtcaaaatatcatt 124  Q
    ||||||||||||||    
T  12651227 gtcaaaatatcatt 12651214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 17117162 - 17117050
Alignment:
Q  13 ttatacttttat-tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatg 111  Q
    |||||||||| | ||||||||||||||||  ||||||||| |||  |||| ||||||| |||||||||| ||||| |  ||| ||||  |||||||| ||    
T  17117162 ttatacttttttctctctcttcctttttcactctctattgctattgtccagtaagaatggaggaaaaaggttgtcacccaaaattgtctaaaattggttg 17117063  T
Q  112 tcaaaatatcatt 124  Q
    |||||||||||||    
T  17117062 tcaaaatatcatt 17117050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 19223544 - 19223625
Alignment:
Q  43 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||||  |||||||| || |||||||||| ||||||  ||||| || ||||||||||  |||||||||||||||    
T  19223544 tctctattgttattgtccaataaaaagagaggaaaaaaattgtcattaaaaattattgaaaattgattgtcaaaatatcatt 19223625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 48814808 - 48814742
Alignment:
Q  16 tacttttattctc--tcttcctttttctttctctattgttatcatccaataagaatagaggaaaaag 80  Q
    |||||||||||||  ||||||||||||| |||||||||||||  |||||||| || |||| ||||||    
T  48814808 tacttttattctccctcttcctttttctctctctattgttattgtccaataaaaaaagagaaaaaag 48814742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 44255838 - 44255788
Alignment:
Q  75 aaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcattt 125  Q
    |||||| ||||||||||||||| || |||||||  ||||||||||||||||    
T  44255838 aaaaaggttgtccctaaaagttatttaaaattgattgtcaaaatatcattt 44255788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 13437271 - 13437303
Alignment:
Q  21 ttattctctcttcctttttctttctctattgtt 53  Q
    ||||||||||||||||||| |||||||||||||    
T  13437271 ttattctctcttcctttttgtttctctattgtt 13437303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 29763909 - 29763937
Alignment:
Q  25 tctctcttcctttttctttctctattgtt 53  Q
    |||||||||||||||||||||||||||||    
T  29763909 tctctcttcctttttctttctctattgtt 29763937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 48639381 - 48639349
Alignment:
Q  21 ttattctctcttcctttttctttctctattgtt 53  Q
    ||||||||||||||||||||| |||||||||||    
T  48639381 ttattctctcttcctttttctctctctattgtt 48639349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 1203 - 1093
Alignment:
Q  16 tacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtc 113  Q
    ||||||||||||  |||||||||||||| |||||||||||||  |||||||||||  |||||||||| ||||| |  ||||||||| |||||||| ||||    
T  1203 tacttttattctctctcttcctttttctctctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtc 1104  T
Q  114 aaaatatcatt 124  Q
    |||||||||||    
T  1103 aaaatatcatt 1093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 31350620 - 31350498
Alignment:
Q  4 atactctcgttatacttttattc--tctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttga 101  Q
    ||||||| ||| |||||||||||  ||||||||||||||| ||| |||||||||  |||||||| || |||| |||||  ||||| |||||||||||||     
T  31350620 atactcttgttgtacttttattcactctcttcctttttctctctatattgttattgtccaataaaaagagagaaaaaaagttgtcactaaaagttgttgg 31350521  T
Q  102 aaattggatgtcaaaatatcatt 124  Q
    ||||||| |||||||||||||||    
T  31350520 aaattggttgtcaaaatatcatt 31350498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 49875874 - 49875972
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||||| ||||||| |||||||||||||  |||||| | || |||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||    
T  49875874 tctctcttcatttttctctctctattgttattgtccaatgaaaagagaggaaaaa-attgtcactaaaagttgttggaaattggttgtcaaaatatcatt 49875972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 33976383 - 33976286
Alignment:
Q  27 tctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||| ||||||| ||||||||||||| ||||||||| || |||||||||   ||||| |||||| ||||||||||||  ||||||||||||||||    
T  33976383 tctcttcatttttctctctctattgttattatccaataaaaagagaggaaaagtgttgtcactaaaaattgttgaaaattaaatgtcaaaatatcatt 33976286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 50886272 - 50886369
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||||||||||||| |||||||||||||  |||||||| ||  |||||||||  ||||| || |||||||||||||||||  |||||||||||||||    
T  50886272 tctctcttcctttttctctctctattgttattgtccaataaaaa--gaggaaaaacgttgtcactgaaagttgttgaaaattgattgtcaaaatatcatt 50886369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 50886450 - 50886573
Alignment:
Q  4 atactctcgttatacttttat-tctctcttcctttttctttctct--attgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttg 100  Q
    |||||||| |||||||||  | |||||||||||||||||||||||  |||| |||  |||||||||||| |||||||||| ||||| |  ||||||||      
T  50886450 atactctcattatactttattctctctcttcctttttctttctctctattgctattgtccaataagaatggaggaaaaaggttgtcacccaaagttgtct 50886549  T
Q  101 aaaattggatgtcaaaatatcatt 124  Q
    |||||||| |||||||||||||||    
T  50886550 aaaattggttgtcaaaatatcatt 50886573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 31425589 - 31425709
Alignment:
Q  4 atactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaa 103  Q
    |||||||| || ||||||||||||||||   | ||| | |||||||||||||  |||||||| || ||||||||||| |||||  ||||| || ||||||    
T  31425589 atactctcattgtacttttattctctctctttctttttctctctattgttattgtccaataaaaagagaggaaaaaggttgtcattaaaaattattgaaa 31425688  T
Q  104 attggatgtcaaaatatcatt 124  Q
    ||| | |||||||||||||||    
T  31425689 attagttgtcaaaatatcatt 31425709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 15927609 - 15927487
Alignment:
Q  4 atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttga 101  Q
    |||||||| || ||||||||||||||||  |||||||||| || ||||||||||  |||||||| || || | |||||  ||||| |||||| || |||     
T  15927609 atactctcattgtacttttattctctctcttcctttttctctcactattgttattgtccaataaaaagagcgaaaaaaagttgtcactaaaaattattgg 15927510  T
Q  102 aaattggatgtcaaaatatcatt 124  Q
    ||||||| |||||||||||||||    
T  15927509 aaattggttgtcaaaatatcatt 15927487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 46114377 - 46114255
Alignment:
Q  2 ttatactctcgttatacttttatt--ctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgtt 99  Q
    ||||| |||| || ||||||||||  |||||||| ||||||| |||||||||||||  | |||||  || ||||||||||| ||||| | ||||||||||    
T  46114377 ttatattctcattgtacttttattttctctcttcttttttctctctctattgttattgttcaatagaaagagaggaaaaaggttgtcaccaaaagttgtt 46114278  T
Q  100 gaaaattggatgtcaaaatatca 122  Q
    | ||||||  |||||||||||||    
T  46114277 ggaaattgattgtcaaaatatca 46114255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 47479060 - 47479159
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||||||||||||||||| ||||  || || |||||   || ||||| ||||||||||||| ||||| |||||||  |||||||||||||||    
T  47479060 tctctcttcctttttctttctctattattattgtcaaagaagaaggaagaaaaaaaattgtccctaaaaattgtttaaaattgattgtcaaaatatcatt 47479159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 40367674 - 40367742
Alignment:
Q  13 ttatacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaa 79  Q
    |||||||||||||||  ||||| |||||||| ||||||||||||| |||||||||||| ||||||||||    
T  40367674 ttatacttttattctgtctctttctttttctctctctattgttattatccaataagaagagaggaaaaa 40367742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 4617758 - 4617855
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||||||  ||||||||||||||  |||||||| ||||||||||||| | ||||    ||| |||||  |||||||||||||||||||||||    
T  4617758 tctctcttccttttt--ttctctattgttattgtccaataaaaatagaggaaaaaaactgtcatccaaaattgtttgaaattggatgtcaaaatatcatt 4617855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 43898622 - 43898742
Alignment:
Q  4 atactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaa 103  Q
    |||||||| |||||||||||||  ||||| |||||| | |||||||||||||  ||||||||||| | || |||||  |||||  | ||||||||| |||    
T  43898622 atactctcattatacttttatttcctctttctttttttctctctattgttattgtccaataagaagatagaaaaaaagttgtcaatgaaagttgtttaaa 43898721  T
Q  104 attggatgtcaaaatatcatt 124  Q
    | | | |||||||||||||||    
T  43898722 aattgttgtcaaaatatcatt 43898742  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 34608191 - 34608278
Alignment:
Q  37 tttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||| |||||||| |||| ||||||||||||   || ||||||||| ||||||||||||||| ||||||   |||||||||||||||    
T  34608191 tttctctctctattattattatccaataagaaggaagaaaaaagattatccctaaaagttgtttaaaattaattgtcaaaatatcatt 34608278  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 37143201 - 37143280
Alignment:
Q  43 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||||  |||||||| ||  |||||||||| ||||| ||||||||||||| ||||| | |||||||||||||||    
T  37143201 tctctattgttattgtccaataaaaa--gaggaaaaaggttgtcactaaaagttgttggaaattagttgtcaaaatatcatt 37143280  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 31931008 - 31930927
Alignment:
Q  43 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||||  |||||| | || ||||||||||| || || |||||| |||||| ||||||| |||||||||||||||    
T  31931008 tctctattgttattctccaatgaaaagagaggaaaaaggttatcactaaaatttgttggaaattggttgtcaaaatatcatt 31930927  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 38017918 - 38017859
Alignment:
Q  19 ttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaa 78  Q
    ||||||||||||||| | ||||||||||||||||| | |||||||||||| |||| ||||    
T  38017918 ttttattctctcttcttctttctttctctattgtttttatccaataagaagagagaaaaa 38017859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 31664732 - 31664786
Alignment:
Q  70 agaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||||||| || || ||||||||||||| ||||||| |||||||||||||||    
T  31664732 agaggaaaaaggttatcactaaaagttgttggaaattggttgtcaaaatatcatt 31664786  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 19961989 - 19962055
Alignment:
Q  4 atactctcgttatacttttattctc--tcttcctttttctttctctattgttatcatccaataagaa 68  Q
    |||| ||| ||||||||||||||||  ||||||||||||| |||||||| ||||  |||||||||||    
T  19961989 atacactcattatacttttattctctctcttcctttttctctctctattattattgtccaataagaa 19962055  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 35987055 - 35987090
Alignment:
Q  89 taaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||||||||||| |||||||||||||||    
T  35987055 taaaagttgttgaaaattggttgtcaaaatatcatt 35987090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 33389065 - 33389141
Alignment:
Q  4 atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaa 79  Q
    |||||||| |||||||||||||||||||  | | |||||| ||| |||| |||| |||||||||||| ||||||||||    
T  33389065 atactctcattatacttttattctctctcattccttttctctctatatt-ttattatccaataagaagagaggaaaaa 33389141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 34626508 - 34626446
Alignment:
Q  298 ctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattcaa 360  Q
    ||||||| ||||||| |||||| || ||||| || ||||| || |||||||||||||||||||    
T  34626508 ctcaaattgcagcacaattaccaggtagaacggataatgagattaaaaacttttggaattcaa 34626446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 38910573 - 38910537
Alignment:
Q  43 tctctattgttatcatccaataagaatagaggaaaaa 79  Q
    ||||||||||| | |||||||||||||||||||||||    
T  38910573 tctctattgtttttatccaataagaatagaggaaaaa 38910537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 41610406 - 41610494
Alignment:
Q  36 ttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||| |||||||||||||  || ||||| || |||| |||||  ||||| ||| |||||||| |||||| |  ||||||||||||||    
T  41610406 ttttctctctctattgttattgtctaataaaaagagagaaaaaatgttgtcactagaagttgtttaaaatttgtagtcaaaatatcatt 41610494  T

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Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 12172105 - 12171977
Alignment:
Q  4 atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaa-taagaatagaggaaaaagattgtccctaaaagttgttg 100  Q
    |||||||| || ||||||||||||||||  || ||||||| |||||||||||||  ||||| ||||||  |||||||||| ||||| |||||| |||||     
T  12172105 atactctcattgtacttttattctctctcttcatttttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgttt 12172006  T
Q  101 aaaattggatgtcaaaatatcatttttct 129  Q
    |||||||| ||||||||||||||| ||||    
T  12172005 aaaattggttgtcaaaatatcattcttct 12171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 12416533 - 12416405
Alignment:
Q  4 atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaa-taagaatagaggaaaaagattgtccctaaaagttgttg 100  Q
    |||||||| || ||||||||||||||||  || ||||||| |||||||||||||  ||||| ||||||  |||||||||| ||||| |||||| |||||     
T  12416533 atactctcattgtacttttattctctctcttcatttttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgttt 12416434  T
Q  101 aaaattggatgtcaaaatatcatttttct 129  Q
    |||||||| ||||||||||||||| ||||    
T  12416433 aaaattggttgtcaaaatatcattcttct 12416405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 7612200 - 7612101
Alignment:
Q  25 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    ||||||||  ||||||| |||||||| ||||  || ||||||||   || ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  7612200 tctctctttatttttctctctctattattattgtctaataagaaggaagaaaaaagattgtccctaaaagttgtttaaaattggttgtcaaaatatcatt 7612101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 12946601 - 12946520
Alignment:
Q  43 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||| ||  | |||||| ||||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  12946601 tctctattgtcattgttcaataaaaatagagaaaaaaagttgtcccaaaaagttgttgaaaattggatgtcaaaatatcatt 12946520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 40649562 - 40649636
Alignment:
Q  43 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaa 117  Q
    ||||||||| |||  |||||||| |||||||||||||| ||||| |||||| |||||||||||||| ||||||||    
T  40649562 tctctattgctattgtccaataaaaatagaggaaaaaggttgtcactaaaaattgttgaaaattggttgtcaaaa 40649636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 5948267 - 5948210
Alignment:
Q  315 ttaccgggaagaactgacaatgaaataaaaaacttttggaattcaactataaagaaaa 372  Q
    ||||| |||||||| || ||||| ||||||||||||||||||||||| ||||||||||    
T  5948267 ttacctggaagaacagataatgagataaaaaacttttggaattcaaccataaagaaaa 5948210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 12946678 - 12946720
Alignment:
Q  82 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 124  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  12946678 ttgtccctaaaaattattgaaaattggatgtcaaaatatcatt 12946720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 9306493 - 9306391
Alignment:
Q  19 ttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaat 118  Q
    ||||||||||||||||||||  |||||||||| ||||  ||||||||||||  || |||||  || ||||||||| || ||  ||||||  |||||||||    
T  9306493 ttttattctctcttcctttt--tttctctattattattgtccaataagaatgtagaaaaaaagttatccctaaaa-ttattttaaattgattgtcaaaat 9306397  T
Q  119 atcatt 124  Q
    ||||||    
T  9306396 atcatt 9306391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 21514953 - 21514900
Alignment:
Q  4 atactctcgttatacttttattctctct--tcctttttctttctctattgttat 55  Q
    |||||||| || ||||||||||||||||  |||||||||| |||||||||||||    
T  21514953 atactctcattgtacttttattctctctcatcctttttctctctctattgttat 21514900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 31266236 - 31266171
Alignment:
Q  16 tacttttattctctcttc--ctttttctttctctattgttatcatccaataagaatagaggaaaaa 79  Q
    |||||||||||||||||   |||||||| |||||||||||||  |||||||| || ||||||||||    
T  31266236 tacttttattctctctttttctttttctctctctattgttattgtccaataaaaagagaggaaaaa 31266171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 37792151 - 37792054
Alignment:
Q  27 tctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcattt 125  Q
    ||||||||||||||| |||||||| ||||  || ||||||||  || ||||||  |||||||||||| || || |||||| | ||| ||||||||||||    
T  37792151 tctcttcctttttctctctctattattattgtctaataagaa-ggaagaaaaaagttgtccctaaaaattatttaaaattagttgtgaaaatatcattt 37792054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 36023145 - 36023267
Alignment:
Q  4 atactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaa 103  Q
    |||||||| ||||||||||||| |||||  ||| || |||||||  ||||||  |||||| | ||  |||||||||||||||| |  ||| || || |||    
T  36023145 atactctcattatacttttattttctct--cttcttttttctct--tgttattgtccaattaaaagggaggaaaaagattgtcacccaaaattatttaaa 36023240  T
Q  104 attggatgtcaaaatatcatttttctt 130  Q
    ||||  ||||||||||||||| |||||    
T  36023241 attgattgtcaaaatatcattcttctt 36023267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 44712490 - 44712605
Alignment:
Q  11 cgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattgg 108  Q
    |||| |||||||||||||| |  || ||||||| ||||||||| |||    ||||||||||||||||||||| |||||    ||||||||  ||||||||    
T  44712490 cgttgtacttttattctctttattcttttttctctctctattgctattgctcaataagaatagaggaaaaaggttgtcatccaaagttgtctaaaattgg 44712589  T
Q  109 atgtcaaaatatcatt 124  Q
     | | |||||||||||    
T  44712590 ttattaaaatatcatt 44712605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 6122 - 6038
Alignment:
Q  38 ttctttctctattgttatcatccaataagaatagaggaaaaa-gattgtccctaaaagttgttgaaaattggatgtcaaaatatca 122  Q
    |||| ||||||||||| | |||||||||||| |||||||||| | ||||| | ||| |||||| ||||||||||||  ||||||||    
T  6122 ttctctctctattgtttttatccaataagaagagaggaaaaatggttgtcac-aaatgttgtttaaaattggatgtacaaatatca 6038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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