View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14793_low_32 (Length: 244)
Name: NF14793_low_32
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 42423775 - 42423555
Alignment:
| Q |
11 |
gaactataacaaaaatatttatcat-ttctatattaaatatttacccgttcacaaaaataatttagatccttctttttcaatatttgctttaatattgtt |
109 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42423775 |
gaactataacaaaaatatttatcatattatatattaaatatttacccgttcacaaaaataatttagatccttctttttcaatatttgctttaatattgtt |
42423676 |
T |
|
| Q |
110 |
tattttgaagtgataaatatcaactaaaatttacacgttacttgacagcgagatattgagtgttgaatatggattaagatgttcggtctataaatattga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
42423675 |
tattttgaagtgataaatatcaactaaaatttacacgttacttgacagcgagatattaagtgttgaatatgaattaagatgtttggtctataaatgttga |
42423576 |
T |
|
| Q |
210 |
cattgttagttgagttaagtg |
230 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42423575 |
cattgttagttgagttaagtg |
42423555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University