View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14793_low_5 (Length: 512)
Name: NF14793_low_5
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 38623300 - 38623584
Alignment:
| Q |
16 |
caagaagaatgaaatgagttatacttatatgatagaagatgacctgaagagtgagcagtagaggaagctgatcctaacaatgttcgtttgattctcaagt |
115 |
Q |
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| T |
38623300 |
caagaagaatgaaatgagttatacttatatgatagaagatgacctgaagagtgagcagtagaggaagctgatcctaacaatgttcgtttgattctcaagt |
38623399 |
T |
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| Q |
116 |
gctgcaccataatcttcagttgtgtagtacagtactactatgatgtaataatactctgttcctagtcccttgtagaagaactaaagttttatcgtgtttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38623400 |
gctgcaccataatcttcagttgtgtagtacagtactactatgatgtaataataccctgttcctagtcccttgtagaagaactaaagttttatcgtg-ttt |
38623498 |
T |
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| Q |
216 |
cagtgccgtatgtatccaaacgcgaaacaaaacagacctagtgttctattatcaaatgtggatgttttctcctacttgcaaatgga |
301 |
Q |
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| T |
38623499 |
cagtgccgtatgtatccaaacgcgaaacaaaacagacctggtgttctattatcaaatgtggatgttttctcctacttgcaaatgga |
38623584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 347 - 496
Target Start/End: Original strand, 38623630 - 38623779
Alignment:
| Q |
347 |
cttgacggaagttaaatgtaaaataaattatttatgtgacgaaaacataaacatatgaactgtgggtgggtgtaaccgtctcaagagagaaacggaacaa |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38623630 |
cttgacggaagttaaatgtaaaataaattatttatgtgacgaaaacataaacatatgaactgtgggtgggtgtaaccgtctcaagagagaaagggaacaa |
38623729 |
T |
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| Q |
447 |
attatttatgatagggtaagaaaaattgatcccaaatttgcagtcaaact |
496 |
Q |
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| T |
38623730 |
attatttatgatagggtaagaaaaattgatcccaaatttgcagtcaaact |
38623779 |
T |
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