View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14793_low_9 (Length: 441)
Name: NF14793_low_9
Description: NF14793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14793_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 34299999 - 34300306
Alignment:
| Q |
1 |
gctccaaatccaagtttaacaaattattcattctgttgcaatttacaatggcatcatcatattgtgtaggaactctattttcctcacaaaccaaacattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34299999 |
gctccaaatccaagtttaacaaattattcattctgttgaaatttacaatggcatcatcat---gtgtaggaactctattttcctcacaaaccaaacattt |
34300095 |
T |
|
| Q |
101 |
gactgctaccaaggtaagtgtaactttgcattcaacaaagagaagagttgtaagagcagctgtcacagaaaaacttggaatcaagattgagagcaaccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34300096 |
gactgctaccaaggtaagtgtaactttgcattcaacaaagagaagagttgtaagagcagctgtcacagaaaaacttggaatcaagattgagagcaaccct |
34300195 |
T |
|
| Q |
201 |
cctgagtccaagctcactcaacttggtgttaggcaatggcccaagtaaaaaccacatttcttcattatcttgttactttttaccttatcaggtttattat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34300196 |
cctgagtccaagctcactcaacttggtgttagacaatggcccaagtaaaaaccacatttcttcattatcttgttactttttaccttatcaggtttattat |
34300295 |
T |
|
| Q |
301 |
tctaatgaaac |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
34300296 |
tctaatgaaac |
34300306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 413
Target Start/End: Original strand, 34300382 - 34300412
Alignment:
| Q |
383 |
aatttatgattcatgctatgtgcctatgcta |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
34300382 |
aatttatgattcatgctatgtgcctatgcta |
34300412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 20661399 - 20661365
Alignment:
| Q |
213 |
ctcactcaacttggtgttaggcaatggcccaagta |
247 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20661399 |
ctcactcaacttggtgttaggcaatggtccaagta |
20661365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University