View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14794_high_1 (Length: 592)
Name: NF14794_high_1
Description: NF14794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14794_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 458 - 586
Target Start/End: Original strand, 26878161 - 26878289
Alignment:
| Q |
458 |
ggagaagttaaacgtatattcttagacatacaagctctaaaaatatcataaaatacgagtctctaaactaatagtcctcaaaactagcaaattccttgaa |
557 |
Q |
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| T |
26878161 |
ggagaagttaaacgtatattcttagacatacaagctctaaaaatatcatagaatacgagtctctaaattaatagttcccaaaactagcaaattccttgaa |
26878260 |
T |
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| Q |
558 |
tccaaggagaggctaaagtttgatagtcg |
586 |
Q |
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| T |
26878261 |
tccaaggagaggctaaagtttgatagtcg |
26878289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 206 - 375
Target Start/End: Original strand, 26877515 - 26877677
Alignment:
| Q |
206 |
gaattaacaagttcctatgtaaattttgatgttttaggtgacacaatttcatgacttcttgtggtctaagagtggtactaatttagcttattcnnnnnnn |
305 |
Q |
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| T |
26877515 |
gaattaacaagttcctatgtaaattttgatgctttaggtgacacactttcatgacttgttgtggtctaagagtggtactaatttagcttatt-------a |
26877607 |
T |
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| Q |
306 |
nnnnnnnnnntctaattctagttattttttaaaattgttgggcatagactttcatataacatataaataa |
375 |
Q |
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| T |
26877608 |
aaaaaaaaaaactaattctagttatttttgaaaattgctgggcatagactttcatataacatataaataa |
26877677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 26877417 - 26877462
Alignment:
| Q |
104 |
caaatcatcttagagtttc--atacacttgttttatactactagta |
147 |
Q |
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| T |
26877417 |
caaatcatcttagagtttcatatatacttgttttatactactagta |
26877462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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