View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14794_high_17 (Length: 239)
Name: NF14794_high_17
Description: NF14794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14794_high_17 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 4646438 - 4646636
Alignment:
| Q |
19 |
atggcatatatcacaagtggcttgatgatcaaaagataatgaaggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaag |
118 |
Q |
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| T |
4646438 |
atggcatatatcacaagtggcttgatgatcaaaagataatgaaggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaag |
4646537 |
T |
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| Q |
119 |
tgccataaagtagaagaaggaatggtcaagtttttattggtgatgaaaacatgataaacaaaagaattattgtataaaggaaaagcagaaaaacctaaaa |
218 |
Q |
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| T |
4646538 |
tgccataaagtagaagaaggaatggtcatgtttttattgg---tggaaacatgataaataaaagaattattgtgtaaaggaaaagcagaaaaatctaaaa |
4646634 |
T |
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Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 8849568 - 8849370
Alignment:
| Q |
19 |
atggcatatatcacaagtggcttgatgatcaaaagataatgaaggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaag |
118 |
Q |
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| T |
8849568 |
atggcatatatcacaggtggctttatgatcaaaagataatgaaggataaattttggacatatgagacagtctcttatgagaaacatgccctaacctaaaa |
8849469 |
T |
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| Q |
119 |
tgccataaagtagaagaaggaatggtcaagtttttattggtgatgaaaacatgataaacaaaagaattattgtataaaggaaaagcagaaaaacctaaaa |
218 |
Q |
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| T |
8849468 |
tgccataaagcagaagaaggaatggtcaaatttttattgg---tggaaatatgattaagagaagaattattgtgcaaagaaaaagcagaaaaatctaaaa |
8849372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 19653241 - 19653174
Alignment:
| Q |
74 |
gacatatgagagagtctcttatgagaaacatgccataacttaaagtgccataaagtagaagaaggaat |
141 |
Q |
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| T |
19653241 |
gacatatgagacaatctcttatgagagacatgacctaatctgaagtgccataaagcagaagaaggaat |
19653174 |
T |
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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 34066647 - 34066517
Alignment:
| Q |
26 |
atatcacaagtggcttgatgatcaaaagataatgaaggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaagtgccata |
125 |
Q |
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| T |
34066647 |
atatcacatgtggctttgtgatcaaaggttaatgcagggtaaagagtagacatatgagacagtcttttatgagaaacatgtcccaatctaaaatgccata |
34066548 |
T |
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| Q |
126 |
aagtagaagaaggaatggtcaagtttttatt |
156 |
Q |
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| T |
34066547 |
aagcagaagaaggaatggttaaggttttatt |
34066517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 28559810 - 28559711
Alignment:
| Q |
61 |
aggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaagtgccataaagtagaagaaggaatggtcaagtttttattggtg |
160 |
Q |
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| T |
28559810 |
aggataaatttgagacatatgagataatctcttatgagatacatgacctaacctgaagtgtcataatgcagaagaaagaatggttaaatttgtattggtg |
28559711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 19034361 - 19034277
Alignment:
| Q |
74 |
gacatatgagagagtctcttatgagaaacatgccataacttaaagtgccataaagtagaagaaggaatggtcaagtttttattgg |
158 |
Q |
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| T |
19034361 |
gacatataagaaagtgtcttatgagatacatgacctaacctgaagtgccataaagcagaagaaggaatggttaaatttgtattgg |
19034277 |
T |
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Target: scaffold0257 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 13582 - 13515
Alignment:
| Q |
74 |
gacatatgagagagtctcttatgagaaacatgccataacttaaagtgccataaagtagaagaaggaat |
141 |
Q |
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| T |
13582 |
gacatatgagacaatctcttatgagagacatgacctaatctgaagtgccataaagcagaagaaggaat |
13515 |
T |
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