View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14794_high_2 (Length: 538)
Name: NF14794_high_2
Description: NF14794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14794_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 163 - 519
Target Start/End: Complemental strand, 18403768 - 18403412
Alignment:
| Q |
163 |
aatagaagaaatttagtttcaacatttctagcaacatcattggttggagtagtacatgttacaacaacaccactagcactagcacagaattggggcacac |
262 |
Q |
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| T |
18403768 |
aatagaagaaatttagtttcaacatttctagcaacatcaatggttggagtagtacatgttacaacaacaccactagcactagcacagaattggggcacac |
18403669 |
T |
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| Q |
263 |
gttcttttatgaaagaacannnnnnnatgccaggattgtcccctgaagatgcagttttaaggataaaacaaacagctgaagggttacataatcttaggga |
362 |
Q |
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| T |
18403668 |
gttcttttatgaaagaacatttttttatgccaggattgtcccctgaagatgcagttttaaggataaaacaaacagctgaagggttacataatcttaggga |
18403569 |
T |
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| Q |
363 |
aatgttggaaactttgtcttggaggtatgttatgttttatataagattgaaacagaattatcttgaacaggatttgaaaaatgctatcactactttgcct |
462 |
Q |
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| T |
18403568 |
aatgttggaaactttgtcttggaggtatgttatgttttatataagattgaaacagaattatcttgaacaggatttgagaaatgctatcactactttgcct |
18403469 |
T |
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| Q |
463 |
gaaaatcgtcgcaaggagtatgttaaaactgcaaatgagttggttgataacttgact |
519 |
Q |
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| T |
18403468 |
gaaaatcgtcgcaaggagtatgttaaaactgctaatgagttggttgataatttgact |
18403412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 18403914 - 18403854
Alignment:
| Q |
14 |
aatatccacacacaaaaaataccatgtccagcttcactcatgccactacactactccatgc |
74 |
Q |
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| T |
18403914 |
aatatccacacacaaaaaataccatgtccagcttcactcatgccactacactactccatgc |
18403854 |
T |
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