View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14794_high_9 (Length: 297)
Name: NF14794_high_9
Description: NF14794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14794_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 37488495 - 37488783
Alignment:
| Q |
1 |
actgatcactaaagcttacctatgaagaacagcgatacagcctcggtgaccaagaaaggaggcagcttttgaaaggcttgaatcaaagtaagggatcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37488495 |
actgatcactaaagcttacctatgaagaacagcgatacagcctcggtgaccaagaaaggaggcagcttttgaaaggcttgaatcaaagtaagggatcagt |
37488594 |
T |
|
| Q |
101 |
tttggtttcatggaggttgttcctgagctgagaaagacaaagtcacaattgtgtcatatccacaacataagttatccatcacaatcacatcagagtaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37488595 |
tttggtttcatggaggttgttcctgagctgagaaagacaaagtcacaattgtgtcatatccacaacataagtcatccatcacaatcacatcagagtaaat |
37488694 |
T |
|
| Q |
201 |
catcaatttcgtttctaaaattataggcaatgaatgatttgatcctaaaattaatgaaattgaatttttaatgcaaaggtgatgatgtc |
289 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37488695 |
catcaattttgtttctaaaattataggcaatggatgatttgatcctaaaattaatgaaattgcatttttaatgcaaaggtgatgatgtc |
37488783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 285
Target Start/End: Complemental strand, 37543082 - 37542802
Alignment:
| Q |
3 |
tgatcactaaagcttacctatgaagaacagcgatacagcctcggtgaccaagaaaggaggcagcttttgaaaggcttgaatcaaagtaagggatcagttt |
102 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |
|
|
| T |
37543082 |
tgatcacttaagtttacctttgaagaacagcgatacagcctcggtgaccaagaaaggaggcagcttttgaaaggcttgtatcaaagtaaggaatcaattt |
37542983 |
T |
|
| Q |
103 |
tggtttcatggaggttgttcctgagctgagaaagacaaagtcacaattgtgtcatatccacaacataagttatccatcacaatcacatcagagtaaatca |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37542982 |
tggtttcatggaggttgttcctgagatgagaaagacaaagccacaattgtgt--tatacacaacataagtcatccatcacaatcacatcagagtaaatca |
37542885 |
T |
|
| Q |
203 |
tcaatttcgtttctaaaattataggcaatgaatgatttgatcctaaaattaatgaaattgaatttttaatgcaaaggtgatga |
285 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
37542884 |
tcaatttcgtttacaaaattataggcaatgaattatttgatcctaaaattaatgaaattgcatttttaatgcaaatgtgatga |
37542802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University