View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14794_low_12 (Length: 297)
Name: NF14794_low_12
Description: NF14794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14794_low_12 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 4877086 - 4876805
Alignment:
| Q |
16 |
atatgctttgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattccca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4877086 |
atatgctttgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattccca |
4876987 |
T |
|
| Q |
116 |
agtcatagagtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4876986 |
agtcatagagtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgttt |
4876887 |
T |
|
| Q |
216 |
cctcgagttccatgagaacatgccagagcctaaagaaaaaacatagcctgtagtactcttcatgtcatctatatttccagcc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4876886 |
cctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcatgtcatctatatttccagcc |
4876805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 30189703 - 30189422
Alignment:
| Q |
16 |
atatgctttgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattccca |
115 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| |
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| T |
30189703 |
atatgcttggtttttccatgttgaactggattttcagcaataacaattgctgatttactatcacagtaaaccacagttgcttccagctgttgtatcccca |
30189604 |
T |
|
| Q |
116 |
agtcatagagtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgttt |
215 |
Q |
| |
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| ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30189603 |
aatcatagactattttcctcaaccaaatagcttgatttgctgctgcagctgcagctacatactctgcttcagccgtagattgagctacaatttcttgttt |
30189504 |
T |
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| Q |
216 |
cctcgagttccatgagaacatgccagagcctaaagaaaaaacatagcctgtagtactcttcatgtcatctatatttccagcc |
297 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30189503 |
cctcgagttctatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcatgtcatctatatttccagcc |
30189422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 17439757 - 17440038
Alignment:
| Q |
16 |
atatgctttgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattccca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17439757 |
atatgctttgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattccca |
17439856 |
T |
|
| Q |
116 |
agtcatagagtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgttt |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17439857 |
agtcatcgagtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgttt |
17439956 |
T |
|
| Q |
216 |
cctcgagttccatgagaacatgccagagcctaaagaaaaaacatagcctgtagtactcttcatgtcatctatatttccagcc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17439957 |
cctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcatgtcatctatatttccagcc |
17440038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 3062443 - 3062162
Alignment:
| Q |
16 |
atatgctttgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattccca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3062443 |
atatgctttgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtatgccca |
3062344 |
T |
|
| Q |
116 |
agtcatagagtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3062343 |
agtcatagagtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactttgcttcagccgtggattgagctacaatttcttgttt |
3062244 |
T |
|
| Q |
216 |
cctcgagttccatgagaacatgccagagcctaaagaaaaaacatagcctgtagtactcttcatgtcatctatatttccagcc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3062243 |
cctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcatgtcatctatatttccagcc |
3062162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 26083254 - 26083535
Alignment:
| Q |
16 |
atatgctttgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattccca |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
26083254 |
atatgcttggtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcaccataaagcacagttgcttccagctattgtattccca |
26083353 |
T |
|
| Q |
116 |
agtcatagagtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
26083354 |
agtcatagagtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctacttcagccgtggattgagctacaatttcttgttt |
26083453 |
T |
|
| Q |
216 |
cctcgagttccatgagaacatgccagagcctaaagaaaaaacatagcctgtagtactcttcatgtcatctatatttccagcc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26083454 |
cctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcatgtcatgtatatttccagcc |
26083535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 13015364 - 13015492
Alignment:
| Q |
16 |
atatgctttgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattccca |
115 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13015364 |
atatgcttggtttttccatgttgaattggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattccca |
13015463 |
T |
|
| Q |
116 |
agtcatagagtattttcctcaaccaaata |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
13015464 |
agtcatagagtattttcctcaaccaaata |
13015492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 35942767 - 35942681
Alignment:
| Q |
130 |
ttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttc |
216 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| | ||| |||||| |||| ||||| || || || |||||||||| ||||||||| |
|
|
| T |
35942767 |
ttcctcaaccaaatagcttgatttactgctgctgttgcagctacaaactcagcttctgctgttgactgagctacaacctcttgtttc |
35942681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 20330676 - 20330762
Alignment:
| Q |
130 |
ttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttc |
216 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||| | ||| |||||| |||| ||||| || || || |||||||||| ||||||||| |
|
|
| T |
20330676 |
ttcctcaaccaaatagcttgatttacagctgctgttgcagctacaaactcagcttctgctgttgactgagctacaacctcttgtttc |
20330762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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