View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14794_low_16 (Length: 278)
Name: NF14794_low_16
Description: NF14794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14794_low_16 |
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| [»] scaffold0084 (1 HSPs) |
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| [»] scaffold0046 (2 HSPs) |
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Alignment Details
Target: scaffold0084 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 12151 - 12413
Alignment:
| Q |
19 |
ctcatagccacacaaaccaccacactaatcttgactcatgcataccaccaccaccacaatccctcttaaaactcatcaacatgttcaaagttcaaacctt |
118 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12151 |
ctcatagccacacaaaccaccacattaatcttgaatcatgcataccaccaccaccacaatccctcttaaaactcatcaacatgttcaaagtccaaacctt |
12250 |
T |
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| Q |
119 |
tcaattcaaatcttgactcatcacttcttgaaaaaaattgaaattgannnnnnnnnnnnnaatcagcaaaattgaaactgattgaattc----------- |
207 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
12251 |
tcaattcaaatcttgactcaccacttcttgaaaaaaattgaaactga-ttttgttttttgaatcagcaaaattgaaactgattgaattcaattgaggttg |
12349 |
T |
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| Q |
208 |
---ttggagaatgtttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
268 |
Q |
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| T |
12350 |
ttgttggagaatgtttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
12413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 24486 - 24344
Alignment:
| Q |
19 |
ctcatagccacacaaaccaccacactaatcttgactcatgcataccaccaccaccacaatccctcttaaaactcatcaacatgttcaaagttcaaacctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24486 |
ctcatagccacacaaaccaccacactaatcttgactcatgcataccaccaccaccacaatccctcttaaaactcatcaacatgttcaaagttcaaacctt |
24387 |
T |
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| Q |
119 |
tcaattcaaatcttgactcatcacttcttgaaaaaaattgaaa |
161 |
Q |
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| T |
24386 |
tcaattcaaatcttgactcatcacttcttgaaaaaaattgaaa |
24344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 24318 - 24269
Alignment:
| Q |
219 |
ttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24318 |
ttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
24269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 17345765 - 17345906
Alignment:
| Q |
19 |
ctcatagccacacaaaccaccacactaatcttgactcatgcataccaccaccaccacaatccctcttaaaactcatcaacatgttcaaagttcaaacctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||| || ||| |||||||| |
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| T |
17345765 |
ctcatagccacacaaaccaccacactaatcttgactcacgcataccatcaccaccacaatccctcttacaacacatcaacatgtccatagtccaaacctt |
17345864 |
T |
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| Q |
119 |
tcaattcaaatcttgactcatcacttcttgaaaaaaattgaa |
160 |
Q |
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| T |
17345865 |
tgaattcaaatcttcactcaccacttcttgaaaaaaattgaa |
17345906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 43895255 - 43895147
Alignment:
| Q |
46 |
atcttgactcatgcataccaccaccaccacaatccctcttaaaactcatcaacatgttcaaagttcaaacctttcaattcaaatcttgactcatcacttc |
145 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |
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| T |
43895255 |
atcttgaatcatgcataccaccaccatcacaatccctcttaaaactcatcaacatgttcaaagtccaaacctttcaattcaaatcttgactcaccgcttc |
43895156 |
T |
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| Q |
146 |
ttgaaaaaa |
154 |
Q |
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||||||||| |
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| T |
43895155 |
ttgaaaaaa |
43895147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 43895072 - 43895011
Alignment:
| Q |
207 |
cttggagaatgtttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
268 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43895072 |
cttggagaatgtttaatccgataattccgatggatgattttggtgctggtttttatcctttg |
43895011 |
T |
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