View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14794_low_17 (Length: 261)
Name: NF14794_low_17
Description: NF14794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14794_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 19007105 - 19006870
Alignment:
| Q |
10 |
gcataggaagcaatcaaatggaacatggcatgcctcctcaattttcaaaattaatgttctcacaatccaggtgacattgttataattcgatatactagaa |
109 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
19007105 |
gcataagaagcaatcaaatggaacatggcatgcctcctcaattttcaaaattaatgttctcgcaatccaggtgacattgttataatttgatatactagaa |
19007006 |
T |
|
| Q |
110 |
tgctatatacacaaattggtagaaaattttggtagtagaatttaatgaatatcatttatctttcgactagtttttggcacaatatgtagacaatcagttt |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19007005 |
tgctatatacacaaattggtagaaaattttggtagtagaatttaatgaatatcatttatctttcgactagtttttggcataatatgtagacaatcagttt |
19006906 |
T |
|
| Q |
210 |
taccaatttcagtttgcaagacaatggcaaagttac |
245 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
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|
| T |
19006905 |
taccaacttcagtttgcaagacaatggcaaagttac |
19006870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 27787614 - 27787849
Alignment:
| Q |
10 |
gcataggaagcaatcaaatggaacatggcatgcctcctcaattttcaaaattaatgttctcacaatccaggtgacattgttataattcgatatactagaa |
109 |
Q |
| |
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||||| |||| ||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27787614 |
gcataagaagaaatcaaatggaacgtgacatgcctcctcaattttcaaaattaatattctcacaatccaggtgacattattataattcgatatactagaa |
27787713 |
T |
|
| Q |
110 |
tgctatatacacaaattggtagaaaattttggtagtagaatttaatgaatatcatttatctttcgactagtttttggcacaatatgtagacaatcagttt |
209 |
Q |
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||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
27787714 |
tgctatatatgcaaattggtggaaaaatttggtagtagaatttaatgaatatcatttatctttcgactagtttttggcataatatgtagacaatcaattt |
27787813 |
T |
|
| Q |
210 |
taccaatttcagtttgcaagacaatggcaaagttac |
245 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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|
| T |
27787814 |
taccaatttcagtttgcaaaacaatggcaaagttac |
27787849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 19805931 - 19805724
Alignment:
| Q |
10 |
gcataggaagcaatcaaatggaacatggcatgcctcctcaattttcaaaattaatgttctcacaatccaggtgacattgttataattcgatatactagaa |
109 |
Q |
| |
|
||||| |||| | ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19805931 |
gcataagaagaagtcaaatggaacgtggcgtgcctcctcaattttcaaaattaatattctcacaatccaggtgacattgttataattcgatatactagaa |
19805832 |
T |
|
| Q |
110 |
tgctatatacacaaattggtagaaaattttggtagtagaatttaatgaatatcatttatctttcgactagt-ttttggcacaatatgtagacaatcagtt |
208 |
Q |
| |
|
|||||||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
19805831 |
tgctatatacgcaaattggtggagaaatttggtagtagaatttaatgaatatcatttatctttcgactagttttttggcataatatgtagacaatcagtt |
19805732 |
T |
|
| Q |
209 |
ttaccaat |
216 |
Q |
| |
|
|||||||| |
|
|
| T |
19805731 |
ttaccaat |
19805724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 18975754 - 18975958
Alignment:
| Q |
10 |
gcataggaagcaatcaaatggaacatggcatgcctcctcaattttcaaaattaatgttctcacaatccaggtgacattgttataattcgatatactagaa |
109 |
Q |
| |
|
||||| |||| | ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18975754 |
gcataagaagaagtcaaatggaacgtggcgtgcctcctcaattttcaaaattaatattctcacaatccaggtgacattgttataattcgatatactagaa |
18975853 |
T |
|
| Q |
110 |
tgctatatacacaaattggtagaaaattttggtagtagaatttaatgaatatcatttatctttcgactag-tttttggcacaatatgtagacaatcagtt |
208 |
Q |
| |
|
|||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
18975854 |
tgctatatacgcaaattggtggagaaatttggtagtagaatttaatgaatatcatttatctttcgactagttttttggcataatatgtagacaatcagtt |
18975953 |
T |
|
| Q |
209 |
ttacc |
213 |
Q |
| |
|
||||| |
|
|
| T |
18975954 |
ttacc |
18975958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 17534674 - 17534429
Alignment:
| Q |
10 |
gcataggaagcaatcaaatggaacatggcatgcctcctcaattttcaaaattaatgttctcacaatccaggtgacattgttataattcgatatactagaa |
109 |
Q |
| |
|
||||| |||| ||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17534674 |
gcataagaagaaatcaaatggaacgtggcatgcctcctcaattttcgagattaatattctcacaatccaggtgacattgttacaattcgatatactagaa |
17534575 |
T |
|
| Q |
110 |
tgctatatacacaaattggtagaaaattttggtagtagaatttaatgaatatcatttatctttcgactagtttttg----------gcacaatatgtaga |
199 |
Q |
| |
|
|| ||| |||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
17534574 |
tgttatgtacacagattggtggaaaaatttggtagtagaaattaatgaatatcatttatctttcgactagtttttgatgcatatttacacaatatgtaga |
17534475 |
T |
|
| Q |
200 |
caatcagttttaccaatttcagtttgcaagacaatggcaaagttac |
245 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
17534474 |
caatcagttttaccaatttaagtttgccagacaatggcaaagttac |
17534429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 5330120 - 5329913
Alignment:
| Q |
10 |
gcataggaagcaatcaaatggaacatggcatgcctcctcaattttcaaaattaatgttctcacaatccaggtgacattgttataattcgatatactagaa |
109 |
Q |
| |
|
||||| |||| | ||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5330120 |
gcataagaagaagtcaaatggaacgtggcgtgcctcctcaaatttcaaaattaatattctcacaatccaggtgacattgttataattcgatatactagaa |
5330021 |
T |
|
| Q |
110 |
tgctatatacacaaattggtagaaaattttggtagtagaatttaatgaatatcatttatctttcgactagt-ttttggcacaatatgtagacaatcagtt |
208 |
Q |
| |
|
|||||||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
5330020 |
tgctatatacgcaaattggtggagaaatttggtagtagaatttaatgaatatcatttatctttcgactagttttttggcataatatgtagacaatcagtt |
5329921 |
T |
|
| Q |
209 |
ttaccaat |
216 |
Q |
| |
|
|||||||| |
|
|
| T |
5329920 |
ttaccaat |
5329913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 548957 - 548842
Alignment:
| Q |
25 |
aaatggaacatggcatgcctcctcaattttcaaaattaatgttctcacaatccaggtgacattgttataattcgatatactagaatgctatatacacaaa |
124 |
Q |
| |
|
||||||||| |||||| | || ||| ||||| |||||| |||||| ||||||||||| ||||||| | ||||||||| | |||||||||||||| || |
|
|
| T |
548957 |
aaatggaacgtggcatacatcttcagttttcgtgattaatattctcagaatccaggtgatattgttacagttcgatatattggaatgctatatacataat |
548858 |
T |
|
| Q |
125 |
ttggtagaaaattttg |
140 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
548857 |
ttggtagaaaaatttg |
548842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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