View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14794_low_18 (Length: 254)
Name: NF14794_low_18
Description: NF14794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14794_low_18 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 42150095 - 42150330
Alignment:
| Q |
19 |
aggtagtgtatggcatatgaaaagaatggaacttcatatctttgcttccgttctatgcaatgaagtcaaaatgtataagcactccgtttcttcaagtcat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42150095 |
aggtagtgtatggcatatgaaaagaatggaacttgatatctttgcttccgttctatgcaatgaagtcaaaatgtataagcactccgtttcttcaagtcat |
42150194 |
T |
|
| Q |
119 |
gttttatttttaacacgtatcgaacattttctgttctgttctaacttgtctgccaaacattagcttatatttttcaaccggaaagacaaataatttggga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42150195 |
gttttatttttaacacgtatcgaacattttctgttctgttctaacttgtctgccaaacattagcttatatttttcaaccggaaagacgaataatttggga |
42150294 |
T |
|
| Q |
219 |
caacataaatactattctgttttgtgaaatggcgtc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42150295 |
caacataaatactattctgttttgtgaaatggcgtc |
42150330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University