View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14794_low_3 (Length: 428)

Name: NF14794_low_3
Description: NF14794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14794_low_3
NF14794_low_3
[»] chr6 (6 HSPs)
chr6 (18-246)||(13382333-13382562)
chr6 (114-224)||(10067718-10067828)
chr6 (333-406)||(1107934-1108007)
chr6 (151-204)||(9307249-9307302)
chr6 (108-173)||(17848819-17848884)
chr6 (151-224)||(21020850-21020923)
[»] chr1 (3 HSPs)
chr1 (151-217)||(16192278-16192344)
chr1 (152-225)||(8791922-8791995)
chr1 (132-216)||(30050307-30050391)
[»] chr2 (2 HSPs)
chr2 (151-224)||(6788520-6788593)
chr2 (138-182)||(34883939-34883983)
[»] chr7 (5 HSPs)
chr7 (151-223)||(39608615-39608687)
chr7 (151-224)||(18942736-18942809)
chr7 (114-228)||(34703624-34703737)
chr7 (138-191)||(5358239-5358292)
chr7 (151-224)||(8062904-8062977)
[»] chr5 (1 HSPs)
chr5 (151-224)||(23159028-23159101)
[»] chr8 (1 HSPs)
chr8 (151-223)||(28802283-28802355)
[»] chr3 (3 HSPs)
chr3 (121-173)||(51758525-51758577)
chr3 (151-226)||(23152314-23152388)
chr3 (151-223)||(7672337-7672409)
[»] chr4 (4 HSPs)
chr4 (151-202)||(24806492-24806543)
chr4 (151-202)||(36218513-36218564)
chr4 (114-224)||(12034381-12034491)
chr4 (151-189)||(27298561-27298599)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 13382333 - 13382562
Alignment:
Q  18 tcttttacgttgagatgtattgttaatattgtcacgttaattcaagtatttat-gtcgtatcaatttttataaatgtttatttgttgttagtgttgaaga 116  Q
    ||||||| ||||| |||||| ||||||||||||| |||||||||  ||||||| || ||||| || ||||||||| |||| |||||||||||||||||||    
T  13382333 tcttttaagttgaaatgtatggttaatattgtcatgttaattcatatatttattgttgtatcgatctttataaatatttacttgttgttagtgttgaaga 13382432  T
Q  117 ctattttgattgacgaaatagacaattagagataattttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatg 216  Q
    ||||||||| ||| | |||||| ||||| ||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||| ||| |||||||||    
T  13382433 ctattttgactgatggaatagataattaaagataattttaaaattttgatacattgacagactattacgactatttgttatacatttaaggactaaaatg 13382532  T
Q  217 attattactctactactttaagttataata 246  Q
    ||||||||||||||||||||||||||||||    
T  13382533 attattactctactactttaagttataata 13382562  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 10067718 - 10067828
Alignment:
Q  114 agactattttgattgacgaaatagacaattagagataattttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaa 213  Q
    |||||||||||||| || ||||| ||||| |||||  |||||||||||| ||||||||||  ||||||| |   || |||||| ||||||||  ||||||    
T  10067718 agactattttgattaacaaaatacacaatcagagactattttaaaatttcgatacattgagagactattgtggttacttgttacacattcaaagactaaa 10067817  T
Q  214 atgattattac 224  Q
    |||| ||||||    
T  10067818 atgactattac 10067828  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 1108007 - 1107934
Alignment:
Q  333 atatgaacacaaacgcaagaaatgctcttacagaacctcatacagttgtgccatctggctctcatttgccaagg 406  Q
    ||||| |||||||| |||| |||||| | ||| ||||| ||||| || ||||||||  ||||||||||||||||    
T  1108007 atatgcacacaaacacaagcaatgctatgacaaaacctgatacaattatgccatctaactctcatttgccaagg 1107934  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 9307302 - 9307249
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattca 204  Q
    ||||||||||||||||||||| |  ||||||||| ||||||| ||| |||||||    
T  9307302 attttaaaattttgatacatttagagactattatcactatttattacacattca 9307249  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 17848819 - 17848884
Alignment:
Q  108 tgttgaagactattttgattgacgaaatagacaattagagataattttaaaattttgatacattga 173  Q
    |||| ||||||||||||| | |||||||  |||||  || || |||||||||||||||||||||||    
T  17848819 tgttaaagactattttgactaacgaaatgcacaatctgaaattattttaaaattttgatacattga 17848884  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 21020923 - 21020850
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatgattattac 224  Q
    |||||||||||||||||||| ||  ||||||||||| || | |||||| ||||| | || ||||||| ||||||    
T  21020923 attttaaaattttgatacatcgaaagactattataattactcgttatatattcagggaccaaaatgactattac 21020850  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 16192278 - 16192344
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatga 217  Q
    |||||||||||||||||||||||  || |||||| |||| |||||| ||||||||| ||||||||||    
T  16192278 attttaaaattttgatacattgaaggaatattatgactacttgttacacattcaagtactaaaatga 16192344  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 8791922 - 8791995
Alignment:
Q  152 ttttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatgattattact 225  Q
    ||||| |||||||||||| ||| ||||||||||  ||| |||||||||||| | |||| ||||||| |||||||    
T  8791922 ttttagaattttgatacaatgaacgactattatggctacttgttatacattaaggcaccaaaatgactattact 8791995  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 30050391 - 30050307
Alignment:
Q  132 aaatagacaattagagataattttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatg 216  Q
    ||||| ||||| |||||  ||||||||||| |||||||||||   | |||| | ||||||||||| |||||||  ||||||||||    
T  30050391 aaatacacaatcagagactattttaaaattatgatacattgaagaattattgtgactatttgttacacattcagacactaaaatg 30050307  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 6788520 - 6788593
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatgattattac 224  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||||| ||| |  ||||||| ||||||    
T  6788520 attttaaaattttgatacattgaatgactattatgactatttgttacacatttaaggatgaaaatgactattac 6788593  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 34883983 - 34883939
Alignment:
Q  138 acaattagagataattttaaaattttgatacattgaccgactatt 182  Q
    |||||||||||  |||||||||||||||||||||||  |||||||    
T  34883983 acaattagagactattttaaaattttgatacattgagggactatt 34883939  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 39608615 - 39608687
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatgattatta 223  Q
    |||||||||||||||||||||||   |||||| |||||| |  ||| ||||||||| ||||||||||||||||    
T  39608615 attttaaaattttgatacattgaaaaactattgtaactactccttacacattcaaggactaaaatgattatta 39608687  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 18942809 - 18942736
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatgattattac 224  Q
    |||||||||||||||||||||||  ||||||||| ||||||  ||| ||||||| | || ||||||| ||||||    
T  18942809 attttaaaattttgatacattgagtgactattatgactattccttacacattcagggaccaaaatgactattac 18942736  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 34703737 - 34703624
Alignment:
Q  114 agactattttgattgacgaaatagacaattagagataattttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaa 213  Q
    |||||||||||||  ||||| |  |||||||||||  ||||||||| |||||||||||||  ||||||| | |||| | |||||||||| | | |  |||    
T  34703737 agactattttgatcaacgaagtgaacaattagagactattttaaaa-tttgatacattgatggactattgtgactactcgttatacatttatggatcaaa 34703639  T
Q  214 atgattattactcta 228  Q
    |||| ||||||||||    
T  34703638 atgactattactcta 34703624  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 5358292 - 5358239
Alignment:
Q  138 acaattagagataattttaaaattttgatacattgaccgactattataactatt 191  Q
    ||||| |||||  |||||||||||||||||||||||  ||||||| ||||||||    
T  5358292 acaatcagagactattttaaaattttgatacattgaaggactattgtaactatt 5358239  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 8062904 - 8062977
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatgattattac 224  Q
    ||||||||||||| |||||||||| ||||||| | |||| | |||| ||||||||| || ||||| | ||||||    
T  8062904 attttaaaattttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaataactattac 8062977  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 23159101 - 23159028
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatgattattac 224  Q
    |||||||||||||||||||||||  |||||||||||||| |  ||| ||||||| | |||||| ||| ||||||    
T  23159101 attttaaaattttgatacattgatggactattataactaatcattacacattcagggactaaagtgactattac 23159028  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 28802355 - 28802283
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatgattatta 223  Q
    |||||||||||||||||||| ||  ||||||| | ||||||||||| |||||||   |||||||||| |||||    
T  28802355 attttaaaattttgatacatcgatggactattgtgactatttgttacacattcagcgactaaaatgactatta 28802283  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 51758577 - 51758525
Alignment:
Q  121 tttgattgacgaaatagacaattagagataattttaaaattttgatacattga 173  Q
    ||||| |||||||||| ||||| |||||| || ||||||||||||||||||||    
T  51758577 tttgactgacgaaatatacaataagagattatattaaaattttgatacattga 51758525  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 23152314 - 23152388
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatgattattactc 226  Q
    ||||| |||||||||||| ||||  |||||||||  |||||||||| ||||| | | |||||||||||||||||||    
T  23152314 attttgaaattttgatac-ttgagagactattatgcctatttgttacacatttacggactaaaatgattattactc 23152388  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 7672409 - 7672337
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaaatgattatta 223  Q
    |||||| |||||| ||||||| |  || |||||||||||||| ||| ||||||||| || ||||||| |||||    
T  7672409 attttagaattttaatacattaaaagattattataactatttattacacattcaaggaccaaaatgactatta 7672337  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 24806543 - 24806492
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacatt 202  Q
    ||||||||||||| |||||||||  |||||| || |||||||||||||||||    
T  24806543 attttaaaattttaatacattgaaggactataatgactatttgttatacatt 24806492  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 36218564 - 36218513
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataactatttgttatacatt 202  Q
    |||||||| ||||||||||||||  ||||||||| ||||||||||| |||||    
T  36218564 attttaaatttttgatacattgatggactattattactatttgttacacatt 36218513  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 12034491 - 12034381
Alignment:
Q  114 agactattttgattgacgaaatagacaattagagataattttaaaattttgatacattgaccgactattataactatttgttatacattcaagcactaaa 213  Q
    |||||||||||| | || || || ||||| |||||  |||||  ||||||||||||||||  ||||||| | |||| | |||||||||||| | || |||    
T  12034491 agactattttgactaacaaagtatacaatcagagactattttgcaattttgatacattgagggactattgtgactactcgttatacattcagggaccaaa 12034392  T
Q  214 atgattattac 224  Q
    |||| ||||||    
T  12034391 atgactattac 12034381  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 27298599 - 27298561
Alignment:
Q  151 attttaaaattttgatacattgaccgactattataacta 189  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  27298599 attttaaaattttgatacattcacggactattataacta 27298561  T

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