View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14794_low_6 (Length: 383)
Name: NF14794_low_6
Description: NF14794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14794_low_6 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 37 - 378
Target Start/End: Complemental strand, 48237 - 47899
Alignment:
| Q |
37 |
gtccatagaaatttatcaataataatcaacaacaaaatcatcatctcatattatcaccacacctccaatttcttaaatccagaaatcgtcaacaacaatg |
136 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48237 |
gtccatagaaatttatcaatagtaatcaacaacaaaatcatcatctcatattatcac---acctccaatttcttaaatccagaaatcgtcaacaacaatg |
48141 |
T |
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| Q |
137 |
tcattttcttcttagaatttgatcatcggctacaataaataaaactttcagaacctttaaagatccacacttacggtttatacctccttttcctttataa |
236 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48140 |
tctttttcttcttagaatttgattatcggctacaataaataaatctttcaaaacctttaaaggtccacacttacggtttatacctccttttcctttataa |
48041 |
T |
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| Q |
237 |
attcatagcttcaattcctacaacaacccaagagacacatattcttctttgtttaatttctgtctatctcttatatttcactttcttgttgccttctcta |
336 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48040 |
attcatagctttaattcctacaacaacccaacagacacatattattctttgtttaatttctgtctatctcttatatttcactttcttgttgccttctcta |
47941 |
T |
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| Q |
337 |
aaataataaaaatatgaacaaaattgcagccttgttcttcat |
378 |
Q |
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| T |
47940 |
aaataatacaaatatgaacaaaattgcagccttgttcttcat |
47899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 37 - 378
Target Start/End: Original strand, 27439125 - 27439463
Alignment:
| Q |
37 |
gtccatagaaatttatcaataataatcaacaacaaaatcatcatctcatattatcaccacacctccaatttcttaaatccagaaatcgtcaacaacaatg |
136 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27439125 |
gtccatagaaatttatcaatagtaatcaacaacaaaatcatcatctcatattatcac---acctccaatttcttaaatccagaaatcgtcaacaacaatg |
27439221 |
T |
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| Q |
137 |
tcattttcttcttagaatttgatcatcggctacaataaataaaactttcagaacctttaaagatccacacttacggtttatacctccttttcctttataa |
236 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27439222 |
tctttttcttcttagaatttgattatcggctacaataaataaatctttcaaaacctttaaaggtccacacttacggtttatacctccttttcctttataa |
27439321 |
T |
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| Q |
237 |
attcatagcttcaattcctacaacaacccaagagacacatattcttctttgtttaatttctgtctatctcttatatttcactttcttgttgccttctcta |
336 |
Q |
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| T |
27439322 |
attcatagctttaattcctacaacaacccaacagacacatattattctttgtttaatttctgtctatctcttatatttcactttcttgttgccttctcta |
27439421 |
T |
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| Q |
337 |
aaataataaaaatatgaacaaaattgcagccttgttcttcat |
378 |
Q |
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| T |
27439422 |
aaataatacaaatatgaacaaaattgcagccttgttcttcat |
27439463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 9928215 - 9928122
Alignment:
| Q |
45 |
aaatttatcaataataatcaacaacaaaatcatcatc---tcatattatcaccacacctccaatttcttaaatccagaaatcgtcaacaacaat |
135 |
Q |
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| T |
9928215 |
aaatttattaacaataatcaacaacaaaatcatcatcatctcttctcgtcactacacctccaatttctaaaattcagaaatcatcaacaacaat |
9928122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 38 - 378
Target Start/End: Complemental strand, 38473316 - 38472963
Alignment:
| Q |
38 |
tccatagaaatttatcaataataatcaacaacaaaatcatcatc---tcatattatcaccacacctccaatttcttaaatccagaaatcgtcaacaacaa |
134 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| |||||||||| |
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| T |
38473316 |
tccatagaaatttatcaataataatcatcaacaaaatcatcatcatctcatattatcactacacctccaattttttaaatccagaaatcatcaacaacaa |
38473217 |
T |
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| Q |
135 |
tgtcattttcttcttagaatttgatcatcggctacaataaataaaactttcagaacctttaaagatccacacttacggtttatacctccttttcctttat |
234 |
Q |
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|| | |||||||||||||||||||| || |||| ||||||||||| |||||| || |||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
38473216 |
tgcctttttcttcttagaatttgattattggctgcaataaataaatctttcaaaatctttaaagatccacacttacggttcatacctccttttcctctat |
38473117 |
T |
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| Q |
235 |
aaattcatagcttcaattcctacaacaacccaagagacacatattcttc----------tttgtttaatt--tctgtctatctcttatatttcactttct |
322 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |
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| T |
38473116 |
aaattcatagcttcaattcctacaacaaccca--acacacatattcttctttttttttttttttttaatttctctgtctatctcttatatttcactttct |
38473019 |
T |
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| Q |
323 |
tgttgccttctctaaaataataaaaatatgaacaaaattgcagccttgttcttcat |
378 |
Q |
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||||||||||||||||||| || |||||||||||||||| |||||||||||||||| |
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| T |
38473018 |
tgttgccttctctaaaatattataaatatgaacaaaatttcagccttgttcttcat |
38472963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 5206748 - 5206810
Alignment:
| Q |
316 |
actttcttgttgccttctctaaaataataaaaatatgaacaaaattgcagccttgttcttcat |
378 |
Q |
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| T |
5206748 |
actttcttgttgccttctctaaaataatacaaatatgaacaaaattgcagccttgttcttcat |
5206810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 5206590 - 5206672
Alignment:
| Q |
130 |
aacaatgtcattttcttcttagaatttgatcatcggc--tacaataaataaaactttcagaacctttaaagatccacacttac |
210 |
Q |
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||||||||| |||||||||||||||||||| |||||| | ||||||||||| |||| ||||||||||||| | ||||||||| |
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| T |
5206590 |
aacaatgtctttttcttcttagaatttgattatcggctgtgcaataaataaatcttttagaacctttaaaggttcacacttac |
5206672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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