View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14794_low_9 (Length: 305)

Name: NF14794_low_9

Description: NF14794

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14794_low_9

[»] chr8 (5 HSPs)

Alignment Details

Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 5)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 265; E-Value: 1e-148

Query Start/End: Original strand, 13 - 305

Target Start/End: Original strand, 38299510 - 38299802

Alignment:

Q	13	aagaatatatggaatccgattgcgcggtagatttactggactctgataacgagacaatggagcaaaagatatcacggttagtaaaaacttgtgcatccat	112	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38299510	aagaaaatatggaatccgattgcgaggtagatttactggactctgatgacgagacaatggagcaaaaggaatcacggttagtaaaaacttgtgcatccat	38299609	T

Q	113	gatcctttcatctgattattcctttcgtcattgcgagtacgactcaatgaagaacatcatggagtggttatgtcaagatattgttttgcctcctcctgac	212	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38299610	gatcctttcatctgattattcctttcgtcattgcgagtacgactcaatgaagaacatcatggaatggttaagtcaagatattgttttgcctcctcctgac	38299709	T

Q	213	gttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaact	305	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38299710	gttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaact	38299802	T

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Target: chr8; HSP #2

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 233 - 305

Target Start/End: Original strand, 38320475 - 38320547

Alignment:

Q	233	ggatttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaact	305	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38320475	ggatttgtacacgaaagcgaaactcaagcttaaacaggatttggctaccattcctaataggatatctttaact	38320547	T

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Target: chr8; HSP #3

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 247 - 305

Target Start/End: Original strand, 38305663 - 38305721

Alignment:

Q	247	aagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaact	305	Q
		\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38305663	aagagaaactgaagcttaaacaagaattggctaccattcctaataggatatctttaact	38305721	T

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Target: chr8; HSP #4

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 235 - 305

Target Start/End: Original strand, 38316379 - 38316449

Alignment:

Q	235	atttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaact	305	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38316379	atttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaact	38316449	T

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Target: chr8; HSP #5

Raw Score: 29; E-Value: 0.0000004

Query Start/End: Original strand, 236 - 304

Target Start/End: Original strand, 38308385 - 38308453

Alignment:

Q	236	tttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaac	304	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	38308385	tttgtacacggaagagaaacataagctcaaacaacaactggctaccattccttataagatatctttaac	38308453	T

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