View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14795_high_1 (Length: 370)
Name: NF14795_high_1
Description: NF14795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14795_high_1 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 3033522 - 3033873
Alignment:
| Q |
19 |
ctatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3033522 |
ctatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctctaatttcctttctcctctaat--cactgattcttcaatttatctttgt |
3033619 |
T |
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| Q |
119 |
tgtgtagctcagtgaggttatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaag |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3033620 |
tgtgtagctcagtgaggtgatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaag |
3033719 |
T |
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| Q |
219 |
gtccaagtctacaaaaatattattcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat--nnnnn |
316 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3033720 |
gtccaagtctacaaaaatattattcaaacgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactataaaaaaa |
3033819 |
T |
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| Q |
317 |
nnnnctatatggatcgaattgattacaaaatctaaacatggcttcctctctact |
370 |
Q |
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| T |
3033820 |
aaaactatatggatcgaattgattacaaaatctaaacatggcttcctctctact |
3033873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 25125755 - 25125464
Alignment:
| Q |
18 |
actatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttg |
117 |
Q |
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| T |
25125755 |
actatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctctaatttcctttctcctctaat--cactgattcttcaatttatctttg |
25125658 |
T |
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| Q |
118 |
ttgtgtagctcagtgaggttatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaa |
217 |
Q |
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| T |
25125657 |
ttgtgtagctcagtgaggtgatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaaaaaaactatactgtggcataaaacttgatcaa |
25125558 |
T |
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| Q |
218 |
ggtccaagtctacaaaaatattattcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat |
311 |
Q |
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| T |
25125557 |
ggtccaagtctacaaaaagattattcaaatgatagaaagactaatgaataagtgcttgaaaatttatggaaacaaacaatagctacaatactat |
25125464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 3041153 - 3041447
Alignment:
| Q |
19 |
ctatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3041153 |
ctatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctctaatttcctttctcctctaat--cactgattcttcaatttatctttgt |
3041250 |
T |
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| Q |
119 |
tgtgtagctcagtgaggttatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaa- |
217 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| | |
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| T |
3041251 |
tgtgtagctcagtgaggtgatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaaaaaaactatactgtggcatcaaacttgatccag |
3041350 |
T |
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| Q |
218 |
---ggtccaagtctacaaaaatattattcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat |
311 |
Q |
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| T |
3041351 |
gttggtccaagtctacaaaaagattattcaaatgatagcaagactaatgaataagtgctggaaaatttatggaaacaaacaatagctacaatactat |
3041447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 3047117 - 3047179
Alignment:
| Q |
58 |
aaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgttgtg |
122 |
Q |
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| T |
3047117 |
aaggcttcctctctactttcctttctcctctaat--cactgattcttcaatttatctttgttgtg |
3047179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 3041863 - 3041912
Alignment:
| Q |
321 |
ctatatggatcgaattgattacaaaatctaaacatggcttcctctctact |
370 |
Q |
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| T |
3041863 |
ctatatggatgaaattgattacaaaatctaaacatcgcttcctctctact |
3041912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 3039504 - 3039544
Alignment:
| Q |
19 |
ctatttactaccaaaatcatatggaccaaattgattcagaa |
59 |
Q |
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| T |
3039504 |
ctatttactatcaaaattatatggaccaaattgattcagaa |
3039544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 3053817 - 3053856
Alignment:
| Q |
19 |
ctatttactaccaaaatcatatggaccaaattgattcaga |
58 |
Q |
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|||||||||| |||||| |||||||||||||||||||||| |
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| T |
3053817 |
ctatttactatcaaaattatatggaccaaattgattcaga |
3053856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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