View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14795_low_1 (Length: 652)
Name: NF14795_low_1
Description: NF14795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14795_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Complemental strand, 31994664 - 31994092
Alignment:
| Q |
1 |
tcagatgcaatctcttcttgacgatcaaacttatctccacccatcactgactccttgataacatcaatctggtcctcaaacacaaactgataatcatcag |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31994664 |
tcagatgcaatctcttcttgacaatcaaacttatctccacccatcactgattccttgataacatcaatctgatcctcaaacacaaactgataatcatcag |
31994565 |
T |
|
| Q |
101 |
agacatttgttttatttttcgaaccaaatttcatggttgcctttctaatttgatgttcctcccaagcctcttctttgtcagcagtactgtaacgctgcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31994564 |
agacatttgttttatttttcgaaccaaatttcatcgttgcctttctaatttgatgttcctcccaagcctcttctttgtcagcagtactgtaacgctgtgt |
31994465 |
T |
|
| Q |
201 |
agcaaccgaaaaccgcttttcctgattaacgccgccactttgttgatgatcatcataagcttctggcattatatactccttataatcctcagcgctctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31994464 |
agcaaccgaaaaccgcttttcctgattaacgccgccactttgttgatgatcatcataagcttctggcattatatactccttataatcctcagcgctctct |
31994365 |
T |
|
| Q |
301 |
aagcctctcttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaatagatattgtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31994364 |
aagcctctcttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaatagatattgtt |
31994265 |
T |
|
| Q |
401 |
catctagaatatactccttaagctgttgcaatttcttttcctcccttcttttcaagtagtcataccttgaaaaatttctcaagttttgaatatcttcttc |
500 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
31994264 |
catctataatatactccttaaggtgttgcagtttcttttcctcccttcttttcaagtactcataccttgaaaaatttctcaaggtttgaatatcttcttc |
31994165 |
T |
|
| Q |
501 |
agctttagatctcttgaattccctctcaacttgaactgctcctttacttcttctcttcctcgaatccatatct |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31994164 |
agctttagatctcttgaattccctctcaacttgaactgctcctttacttcttctcttcctcgaatccatatct |
31994092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 572 - 631
Target Start/End: Complemental strand, 31994055 - 31993996
Alignment:
| Q |
572 |
ctcgatgatctatgaatcttaaagcgattaaaaaccctagcaaactctctctcgatgcca |
631 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |
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|
| T |
31994055 |
ctcgatgatctatgaatcttaaagcgattaaaaaccctaaccaactctttctcgatgcca |
31993996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 24009093 - 24008839
Alignment:
| Q |
24 |
atcaaacttatctccacccatcactgactccttgataacatcaatctggtcctcaaacacaaactgataatcatcagagacatttgttttatttttcgaa |
123 |
Q |
| |
|
|||||||||| | ||| |||| || ||| ||||||| | ||||||||||||||||||||||||||| ||||||||| |||| | | |||||| ||||||| |
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|
| T |
24009093 |
atcaaacttaacaccatccattaccgacgccttgattaaatcaatctggtcctcaaacacaaactggtaatcatcacagacttgtcttttatctttcgaa |
24008994 |
T |
|
| Q |
124 |
ccaaatttcatggttgcctttctaatttgatgttcctcccaagcctcttctttgtcagcagt------actgtaacgctgcgtagcaaccgaaaaccgct |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||| |||| || ||||||| || |
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| T |
24008993 |
ccaaatttcagtgttgcctttctaatttgatgttcctcccaagcctcttctttctcagcatttggatcattgtaacgctgcctagccacagaaaacctct |
24008894 |
T |
|
| Q |
218 |
tttcctgattaacgccgccactttgttgatgatcatcataagcttctggcattatatactc |
278 |
Q |
| |
|
|||| |||||||| || | ||| |||||||||||||||||||| ||| ||||||| |
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|
| T |
24008893 |
tttcttgattaacaccagc------ttgctgatcatcataagcttctggtattctatactc |
24008839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 24008817 - 24008721
Alignment:
| Q |
309 |
cttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaatagatattgttcatct |
405 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||| ||| ||||| |||||| | | |||| | | ||||||||||||||||| || |||||| |
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| T |
24008817 |
cttcttcgcaagtacattgtatatatctttcttgtgcatgaaatcacggtattccacgtctgaacgcttcactccttcaaatagataatgctcatct |
24008721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 15841101 - 15840947
Alignment:
| Q |
24 |
atcaaacttatctccacccatcactgactccttgataacatcaatctggtcctcaaacacaaactgataatcatcagagacatttgttttatttttcgaa |
123 |
Q |
| |
|
||||||||||| |||| |||| ||||| |||||||| ||||||||| ||||||||||||||| |||||||||||||||| | | |||||||||||| |
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|
| T |
15841101 |
atcaaacttatgtccatccattactgatgccttgatacaatcaatctgctcctcaaacacaaaccgataatcatcagagacttgtcgcttatttttcgaa |
15841002 |
T |
|
| Q |
124 |
ccaaatttcatggttgcctttctaatttgatgttcctcccaagcctcttctttgt |
178 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15841001 |
ccatatttcagctttgcctttctaatttgatgttcctcccaagcctcttctttgt |
15840947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 391
Target Start/End: Complemental strand, 15840915 - 15840738
Alignment:
| Q |
202 |
gcaaccgaaaaccgcttttcctgattaacgccgccactttgttgatgatcatcataagcttctggcattatatactccttataatcctcagcgctctcta |
301 |
Q |
| |
|
||||| ||||| | |||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| | |||| | || | ||||| |
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|
| T |
15840915 |
gcaacagaaaatctcttttcttgattaacgcc---actttgttgat---catcataagcttctggcattctatacgcattat------ccgcaccctcta |
15840828 |
T |
|
| Q |
302 |
agcctctcttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaata |
391 |
Q |
| |
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| ||| | |||||| || ||| |||||||| |||||||||||| ||||||||| | |||| ||||||||| | |||||||||||||| |
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| T |
15840827 |
accctattttcttcacaagtacctcgtatatctctttcttgtgcatgagatcacggcattcttcttttgaaagctcaactccttcaaata |
15840738 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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