View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14795_low_2 (Length: 531)

Name: NF14795_low_2
Description: NF14795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14795_low_2
NF14795_low_2
[»] chr5 (3 HSPs)
chr5 (245-500)||(33433173-33433445)
chr5 (29-175)||(33432928-33433072)
chr5 (30-130)||(33433812-33433910)
[»] chr3 (3 HSPs)
chr3 (245-500)||(19251952-19252223)
chr3 (29-175)||(19251707-19251851)
chr3 (30-130)||(19252590-19252688)
[»] chr8 (1 HSPs)
chr8 (267-505)||(36826217-36826471)
[»] chr7 (2 HSPs)
chr7 (365-405)||(25442173-25442213)
chr7 (29-103)||(25442213-25442285)
[»] chr4 (1 HSPs)
chr4 (55-153)||(12826129-12826227)
[»] chr6 (1 HSPs)
chr6 (55-111)||(34991999-34992055)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 245 - 500
Target Start/End: Original strand, 33433173 - 33433445
Alignment:
Q  245 tgttgttttcactgaaaccacttctttacgcaatggatcaagtaacaaaatcttttttgctgtaacaattgcttttataaactccaaattcactaccatg 344  Q
    |||||||| ||| ||||| || |||| || ||| ||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||    
T  33433173 tgttgtttccacggaaactacctcttgacacaaaggatcaagtaacaaaatctctttcaatgtaacaattgcttttataaactccaaattcactaccatg 33433272  T
Q  345 gctttctctcacgctataaa-----------------taattaggaaaaatgaaaccttaattcacaaacaagaattaatttgtaaaccctaaatttgaa 427  Q
    ||||||| || || ||| ||                 |||||| |||| |||||| | |||||||||||| ||| | || |||||||||||||| |||||    
T  33433273 gctttctttctcgttattaacacaataaataaagaattaattaagaaacatgaaatcctaattcacaaactagattgaaattgtaaaccctaaaattgaa 33433372  T
Q  428 ttacagaggatattggaggaatgagagaagacatgaccgagaattctgaagtctctagcgggaatagcggcat 500  Q
    |||  |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  33433373 ttatcgaggatattggaggaatgagagaagacatgaccgagaattttgaggtctctagcgggaatggcggcat 33433445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 33432928 - 33433072
Alignment:
Q  29 tcatctttgctccatttacacacttgctccatttacccctcttcagtacatagatgagtaacacgtggcaaaaattaattcaagggttaggattaaatgg 128  Q
    |||||||||||||||||||||  |||||||||||||||||  ||||| ||||||||||| ||||||||||||||| |||||||||| | |||||||||||    
T  33432928 tcatctttgctccatttacac--ttgctccatttacccctgctcagtgcatagatgagtgacacgtggcaaaaataaattcaagggctgggattaaatgg 33433025  T
Q  129 tttaaaataggtattctttgatacagcaatacacatgttccatcttc 175  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||    
T  33433026 tttaaaatagacattctttgatacaccaatacacatgttccatcttc 33433072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 33433910 - 33433812
Alignment:
Q  30 catctttgctccatttacacacttgctccatttacccctcttcagtacatagatgagtaacacgtggcaaaaattaattcaagggttaggattaaatggt 129  Q
    |||||||||||||||||| |   |||||||||||||||| |||||| |||| |||||| ||||||| || |||| |||||||||| |  |||||||||||    
T  33433910 catctttgctccatttacgcc--tgctccatttacccctattcagtgcatatatgagtgacacgtgacagaaataaattcaagggctgtgattaaatggt 33433813  T

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Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 245 - 500
Target Start/End: Original strand, 19251952 - 19252223
Alignment:
Q  245 tgttgttttcactgaaaccacttctttacgcaatggatcaagtaacaaaatcttttttgctgtaacaattgcttttataaactccaaattcactaccatg 344  Q
    |||||||| ||| ||||| || |||| || ||| ||||||||||||||||||| |||   ||||||| ||||||||||||||||||||||||||||||||    
T  19251952 tgttgtttccacggaaactacctcttgacacaaaggatcaagtaacaaaatctctttcaatgtaacagttgcttttataaactccaaattcactaccatg 19252051  T
Q  345 gctttctctcacgctataaa----------------taattaggaaaaatgaaaccttaattcacaaacaagaattaatttgtaaaccctaaatttgaat 428  Q
    ||||| | || || ||| ||                ||||||  ||| |||||| | |||||||||||| ||| | || |||||||||||||| ||||||    
T  19252052 gctttatttctcgttattaacacaataataaagaattaattaataaacatgaaatcctaattcacaaactagattgaaattgtaaaccctaaaattgaat 19252151  T
Q  429 tacagaggatattggaggaatgagagaagacatgaccgagaattctgaagtctctagcgggaatagcggcat 500  Q
    ||  |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  19252152 tatcgaggatattggaggaatgagagaagacatgaccgagaattttgaggtctctagcgggaatggcggcat 19252223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 19251707 - 19251851
Alignment:
Q  29 tcatctttgctccatttacacacttgctccatttacccctcttcagtacatagatgagtaacacgtggcaaaaattaattcaagggttaggattaaatgg 128  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||| |||  | |||||||||||    
T  19251707 tcatctttactccatttacac--ttgctccatttacccctgttcagtgcatagatgagtgacacgtggcaaaaataaattccaggcctgggattaaatgg 19251804  T
Q  129 tttaaaataggtattctttgatacagcaatacacatgttccatcttc 175  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||    
T  19251805 tttaaaatagacattctttgatacaacaatacacatgttccatcttc 19251851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 19252688 - 19252590
Alignment:
Q  30 catctttgctccatttacacacttgctccatttacccctcttcagtacatagatgagtaacacgtggcaaaaattaattcaagggttaggattaaatggt 129  Q
    |||||||||||||||||| |   |||||||||||||||| |||||| |||| |||||| ||||||| || |||| ||||||||||||  |||||||||||    
T  19252688 catctttgctccatttacgcc--tgctccatttacccctgttcagtgcatatatgagtgacacgtgacagaaataaattcaagggttgtgattaaatggt 19252591  T

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Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 267 - 505
Target Start/End: Original strand, 36826217 - 36826471
Alignment:
Q  267 tctttacgcaatggatcaagtaacaaaatcttttttgctgtaacaattgcttttataaactccaaattcactaccatggctttctctcacgctataaa-- 364  Q
    |||| |||||| |||||||| || ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||      
T  36826217 tcttgacgcaaaggatcaagcaataaaatctcttcagctgtaacaattgcttttataaactccaaattcacaaccattgctttctctctcgctataaaca 36826316  T
Q  365 ---------------taattaggaaaaatgaaaccttaattcacaaacaagaattaatttgtaaaccctaaatttgaattacagaggatattggaggaat 449  Q
                   |||||| |||| | |||||| ||||||| |||| | | | || |||||| ||||||| ||||||||| |||||||||||||||||    
T  36826317 caataaataaataaataattaagaaacaagaaaccctaattcataaacta-attgaaattgtaagccctaaaattgaattaccgaggatattggaggaat 36826415  T
Q  450 gagagaagacatgaccgagaattctgaagtctctagcgggaatagcggcatagcgg 505  Q
    ||||||||||| | || |||||||||| ||||||||||||||||||||||| ||||    
T  36826416 gagagaagacagggccaagaattctgaggtctctagcgggaatagcggcatggcgg 36826471  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 25442173 - 25442213
Alignment:
Q  365 taattaggaaaaatgaaaccttaattcacaaacaagaatta 405  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25442173 taattaggaaaaatgaaaccttaattcacaaacaagaatta 25442213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 25442285 - 25442213
Alignment:
Q  29 tcatctttgctccatttacacacttgctccatttacccctcttcagtacatagatgagtaacacgtggcaaaaat 103  Q
    |||||| ||||||||||||||  ||||||||||||||||| |||||   |||||||||| ||| |||||||||||    
T  25442285 tcatctatgctccatttacac--ttgctccatttacccctgttcagggtatagatgagtgacatgtggcaaaaat 25442213  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 12826129 - 12826227
Alignment:
Q  55 ctccatttacccctcttcagtacatagatgagtaacacgtggcaaaaattaattcaagggttaggattaaatggtttaaaataggtattctttgataca 153  Q
    |||||||||||||| |||| | | ||||||||| ||| |||||||||   || | || |||| ||||| |||||||||||||||| ||| | |||||||    
T  12826129 ctccatttacccctgttcaatgcctagatgagtgacatgtggcaaaacaaaaattaacggtttggattgaatggtttaaaataggcattttgtgataca 12826227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 34992055 - 34991999
Alignment:
Q  55 ctccatttacccctcttcagtacatagatgagtaacacgtggcaaaaattaattcaa 111  Q
    |||||||||||||| |||| | ||||||||||| ||| ||||||||||  |||||||    
T  34992055 ctccatttacccctgttcaatgcatagatgagtgacatgtggcaaaaaacaattcaa 34991999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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