View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14795_low_3 (Length: 459)

Name: NF14795_low_3
Description: NF14795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14795_low_3
NF14795_low_3
[»] chr6 (11 HSPs)
chr6 (16-302)||(11170933-11171219)
chr6 (16-261)||(11276317-11276562)
chr6 (16-273)||(11209755-11210012)
chr6 (16-256)||(11197086-11197326)
chr6 (16-276)||(11156633-11156895)
chr6 (16-256)||(11241005-11241251)
chr6 (16-252)||(11133357-11133593)
chr6 (16-155)||(11161512-11161651)
chr6 (16-155)||(11200255-11200394)
chr6 (348-434)||(11171285-11171371)
chr6 (392-434)||(8382104-8382146)
[»] scaffold1207 (1 HSPs)
scaffold1207 (16-276)||(1248-1490)
[»] scaffold0734 (2 HSPs)
scaffold0734 (219-273)||(6714-6770)
scaffold0734 (392-434)||(1916-1958)
[»] chr7 (8 HSPs)
chr7 (392-435)||(41415672-41415715)
chr7 (392-434)||(2407358-2407400)
chr7 (392-434)||(7875716-7875758)
chr7 (132-246)||(6789991-6790105)
chr7 (190-252)||(8559870-8559932)
chr7 (172-246)||(8585281-8585355)
chr7 (392-434)||(40352671-40352713)
chr7 (138-247)||(3147757-3147866)
[»] chr5 (1 HSPs)
chr5 (392-434)||(5003527-5003569)
[»] chr8 (1 HSPs)
chr8 (392-434)||(18896459-18896501)
[»] chr1 (2 HSPs)
chr1 (393-434)||(33096059-33096100)
chr1 (130-188)||(15595516-15595571)
[»] chr2 (1 HSPs)
chr2 (208-252)||(7542781-7542825)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 11170933 - 11171219
Alignment:
Q  16 ataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgctttt 115  Q
    ||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| |||| ||| ||||||||||| ||||    
T  11170933 ataacaacatcctccactattgatccaaggaaggtttctgctatctcgcgcattttcaccaataccatggatgagatttcttcagcagcaaaatgttttt 11171032  T
Q  116 cctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcact 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11171033 cctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcact 11171132  T
Q  216 aaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgnnnnnnnnttggatcgctttatgaat 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  11171133 aaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaacaattggatcgctttatgaat 11171219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 11276317 - 11276562
Alignment:
Q  16 ataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgctttt 115  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||| |||||||||||    
T  11276317 ataacaacatcctccactgttaatccaaggaaggcttctgctatctcgcgcattttcgccaataccatggatgagatttcttcagcagtaaaatgctttt 11276416  T
Q  116 cctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcact 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11276417 cctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcact 11276516  T
Q  216 aaatttccgaccaattagcctctttgcatctacaaaacaaaagaga 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11276517 aaatttccgaccaattagcctctttgcatctacaaaacaaaagaga 11276562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 11209755 - 11210012
Alignment:
Q  16 ataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgctttt 115  Q
    ||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  11209755 ataacaacatcatccactgttgatccaaggaaggcttctgctgtctctcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgctttt 11209854  T
Q  116 cctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcact 215  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || |     
T  11209855 cctcgtctttatagttaacaacaatcatgggtttgtcatttaggtcgccaattactttgaatggccacaacttcacatcactttctactatggggtcgca 11209954  T
Q  216 aaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11209955 aaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact 11210012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 11197086 - 11197326
Alignment:
Q  16 ataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgctttt 115  Q
    ||||| ||||||| |||||||||||||||| | ||||| ||||||||   |||||| ||||||||||| ||||| |||| ||| ||||||||||||||||    
T  11197086 ataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgctttt 11197185  T
Q  116 cctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcact 215  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||| |||||| |||||||||||| || |  || |     
T  11197186 cctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgca 11197285  T
Q  216 aaatttccgaccaattagcctctttgcatctacaaaacaaa 256  Q
    ||| |||| ||||||||||||||||||||||||||||||||    
T  11197286 aaacttcctaccaattagcctctttgcatctacaaaacaaa 11197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 11156633 - 11156895
Alignment:
Q  16 ataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgctttt 115  Q
    ||||| ||||||| |||||||||||||||| |  |||| ||||||||   |||||| ||||||||||| ||||| |||| ||| ||||||||||||||||    
T  11156633 ataacaacatccttcactgttgatccaaggtaaacttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgctttt 11156732  T
Q  116 cctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcact 215  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||||  |||||||||||||| |||||| |||||| |||||||||||| || |  || |     
T  11156733 cctcgtctttatagttaacaacaatcatgggtttgtcattgaggttgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgca 11156832  T
Q  216 aaatttccgaccaattagcctctttgcatctacaaaacaa--aagagagttgtgtacactatg 276  Q
    ||| |||| |||||||||||||||||||||||||||||||  || ||||||| ||||||||||    
T  11156833 aaacttcctaccaattagcctctttgcatctacaaaacaaacaaaagagttgagtacactatg 11156895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 11241251 - 11241005
Alignment:
Q  16 ataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgctttt 115  Q
    ||||| ||||||| |||||||||||||||| | ||||| |||||||    |||||| ||||||||||| ||||| |||| ||| ||||| ||||||||||    
T  11241251 ataacaacatccttcactgttgatccaaggtaagcttcagctatcttggccatttttgccaataccatcgatgagatttcttcagcagcgaaatgctttt 11241152  T
Q  116 cctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcac- 214  Q
    ||||||||||||||||||||| | ||||  |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||  ||||| ||||     
T  11241151 cctcgtcattatagttaacaatagtcatgtgtttgtcattcaggtcgccaattactttgaagggccacaacttcatatcactttgtatgatggggtcaca 11241052  T
Q  215 -----taaatttccgaccaattagcctctttgcatctacaaaacaaa 256  Q
         |||| |||| ||||||||||||||||||||||||||||||||    
T  11241051 aaacttaaacttcctaccaattagcctctttgcatctacaaaacaaa 11241005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 11133357 - 11133593
Alignment:
Q  16 ataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgctttt 115  Q
    ||||||||||||| |||||||||||||||| |  ||||||| |||||||| ||||| | ||||||||| ||||| ||||  || ||||||||||| ||||    
T  11133357 ataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatttttgtcaataccattgatgatatttcctcagcagcaaaatgttttt 11133456  T
Q  116 cctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcact 215  Q
    ||||  |||| || || ||||||||  | ||||||||||| | | ||||||||||||| ||||||||||| |||| |||||| || ||||| || |||||    
T  11133457 cctctccattgtaattgacaacaatattgggtttgtcatttatgccaccaattactttaaatggccacaatttcatatcactctgaactatagggtcact 11133556  T
Q  216 aaatttccgaccaattagcctctttgcatctacaaaa 252  Q
    |||||  | |||||| |||||||| ||||||||||||    
T  11133557 aaattctctaccaatgagcctcttcgcatctacaaaa 11133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 11161512 - 11161651
Alignment:
Q  16 ataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgctttt 115  Q
    ||||| ||||||| |||||||||||||||| | ||||| || ||||| | |||||| | ||||||||||||||| |||| ||||||||||||||||||||    
T  11161512 ataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgctttt 11161611  T
Q  116 cctcgtcattatagttaacaacaatcataggtttgtcatt 155  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  11161612 cctcgtcattatagttaacaacaatcatgggtttgtcatt 11161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 11200255 - 11200394
Alignment:
Q  16 ataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgctttt 115  Q
    ||||| ||||||| |||||||||||||||| | ||||| || ||||| | |||||| | ||||||||||||||| |||| ||||||||||||||||||||    
T  11200255 ataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgctttt 11200354  T
Q  116 cctcgtcattatagttaacaacaatcataggtttgtcatt 155  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  11200355 cctcgtcattatagttaacaacaatcatgggtttgtcatt 11200394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 11171285 - 11171371
Alignment:
Q  348 gcttgtatagaaaatactcttatatatttaaccctataagaaatacaatcttgggattttggtcccttataaaaaacaataacaaat 434  Q
    |||||||||||||||||| |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11171285 gcttgtatagaaaatactattatatatttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaat 11171371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 8382104 - 8382146
Alignment:
Q  392 acaatcttgggattttggtcccttataaaaaacaataacaaat 434  Q
    |||||||||  |||||| |||||||||||||||||||||||||    
T  8382104 acaatcttgcaattttgatcccttataaaaaacaataacaaat 8382146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 1248 - 1490
Alignment:
Q  16 ataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgctttt 115  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  1248 ataacaacatcctccactgttgatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgctttt 1347  T
Q  116 cctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcact 215  Q
    |||||||||||||||||||||||||||| ||||| |                   | ||||||||||||||||||||||||||| |||||||||||| |     
T  1348 cctcgtcattatagttaacaacaatcatgggtttat------------------gtatgaatggccacaacttcacatcactttctactatgggatcgca 1429  T
Q  216 aaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1430 aaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg 1490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 6714 - 6770
Alignment:
Q  219 tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact 273  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  6714 tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 1916 - 1958
Alignment:
Q  392 acaatcttgggattttggtcccttataaaaaacaataacaaat 434  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  1916 acaatcttgagattttggtcccctataaaaaacaataacaaat 1958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 435
Target Start/End: Original strand, 41415672 - 41415715
Alignment:
Q  392 acaatcttgggattttggtcccttataaaaaacaataacaaatt 435  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  41415672 acaatcttgcgattttggccccttataaaaaacaataacaaatt 41415715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 2407358 - 2407400
Alignment:
Q  392 acaatcttgggattttggtcccttataaaaaacaataacaaat 434  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  2407358 acaatcttgcgattttggtcccctataaaaaacaataacaaat 2407400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 7875716 - 7875758
Alignment:
Q  392 acaatcttgggattttggtcccttataaaaaacaataacaaat 434  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  7875716 acaatcttgcgattttggtcccctataaaaaacaataacaaat 7875758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 246
Target Start/End: Original strand, 6789991 - 6790105
Alignment:
Q  132 aacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaatt 231  Q
    |||||||||||| || |||||||| | | || |||| || ||||||||||| ||| ||| |||| |||| || |  | ||||||||| |||| |||||||    
T  6789991 aacaacaatcatgggcttgtcattgacgccagcaatgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaatt 6790090  T
Q  232 agcctctttgcatct 246  Q
    | |||||| ||||||    
T  6790091 aacctcttagcatct 6790105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 8559870 - 8559932
Alignment:
Q  190 acatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaa 252  Q
    ||||||||||| ||||||| ||||||  ||||||  ||||||| ||||||||||||| |||||    
T  8559870 acatcactttggactatggaatcactgtatttccttccaattaacctctttgcatctgcaaaa 8559932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 8585355 - 8585281
Alignment:
Q  172 ttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatct 246  Q
    ||||||||||||||| | | |||| |||| || | |||||||||||| |||| |||||||| |||||| ||||||    
T  8585355 ttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaacctcttggcatct 8585281  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 40352671 - 40352713
Alignment:
Q  392 acaatcttgggattttggtcccttataaaaaacaataacaaat 434  Q
    ||||||||| |||||||||| | ||||||||||||||||||||    
T  40352671 acaatcttgcgattttggtcgcctataaaaaacaataacaaat 40352713  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 3147757 - 3147866
Alignment:
Q  138 aatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctc 237  Q
    |||||| |||||||||||||   | | ||| || ||||||||||||||| ||| |||| |||| || |  | ||||| ||| |||| |||||||| ||||    
T  3147757 aatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctc 3147856  T
Q  238 tttgcatcta 247  Q
    ||||||||||    
T  3147857 tttgcatcta 3147866  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 5003527 - 5003569
Alignment:
Q  392 acaatcttgggattttggtcccttataaaaaacaataacaaat 434  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  5003527 acaatcttgcgattttgatcccttataaaaaacaataacaaat 5003569  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 18896459 - 18896501
Alignment:
Q  392 acaatcttgggattttggtcccttataaaaaacaataacaaat 434  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
T  18896459 acaatcttgcgattttggtcccctataaaaaacaataataaat 18896501  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Original strand, 33096059 - 33096100
Alignment:
Q  393 caatcttgggattttggtcccttataaaaaacaataacaaat 434  Q
    ||||||||  ||||||||||||||||||||| ||||||||||    
T  33096059 caatcttgcaattttggtcccttataaaaaataataacaaat 33096100  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 15595516 - 15595571
Alignment:
Q  130 ttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaactt 188  Q
    ||||||| |||||| |||||||||||||   ||||||| || |||||||||||||||||    
T  15595516 ttaacaataatcatgggtttgtcattca---caccaatgaccttgaatggccacaactt 15595571  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 7542781 - 7542825
Alignment:
Q  208 ggatcactaaatttccgaccaattagcctctttgcatctacaaaa 252  Q
    ||||||||||| |||| |||||||| |||||| ||||||||||||    
T  7542781 ggatcactaaacttcctaccaattaacctcttagcatctacaaaa 7542825  T

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